BAC Information

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BAC

Clone NameMSMg01-383P03
Chromosome14 (Build37)
Map Location 77,432,882 - 77,433,231
singlet/doubletsinglet
Overlap gene9030625A04Rik
Upstream gene1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik, LOC100043753, LOC100043201
Downstream geneCcdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383P03.T7 (MSMg01no383_p03.b1)MSMg01-383P03.TJ (MSMg01no383_p03.g1)
ACCAG487497AG487498
length745745
length of high quality
(start - end)
350 (106 - 455)583 (70 - 652)
definitionCHROMAT_FILE: MSMg01no383_p03.b1 PHD_FILE: MSMg01no383_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:07 2005CHROMAT_FILE: MSMg01no383_p03.g1 PHD_FILE: MSMg01no383_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:07 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGCAACACCGCGGAATT
CTAGTCTGATCCCTCCAATTTGAGATGTATATTCCTTGGATCTGTTTCAG
TAGTCAGATTATGTAGGCCTCATCCTACCACAAAGCAATGCAATTTACAT
CTATGCCAATGAGATAACCACCCTGTATTGCAAATTCAGAAAACCTTAAG
TGATTAACACACCTACCGGAGTGAGCAACCCCACATGCCTTTTTCACAGG
ATCTGCGAAGACGATGGGTATACAGTCGGCGCCAAGAGCAGTGATTGTGA
CTCCTCTCTGATTTGTGACGATCCCATCGTAAGATTCAGGCTCCTTCTTC
CCCATAACCCACACTTCACTGGCGTGATCAGTCTAACATGAAACACAGAG
CAAAATGTCTGGAAAATGAAACATCTTACATGCGAGCTTTTCTACAAGAA
CTGGTCACCAAATGAGGTAATCAGGGTATGATCATTCGCTTCCATAAGTG
ATAAAATGACAAATATAACAACATCTGCAGATGCGGTTCCTAGGGAAGTA
GACTCAGAAGCCCTGACCCTCCCCCATCAGAGATATGCACATCTTCCCTC
TGAGCACTTCTCCCCAAAGGCAAGGTTCACTTTCTTTGCAGAAATGTGAA
AGTACCCACGGAGTGATTTCCCCCCCTTTATTAACCTCCCCTCCATCTAC
GACTCCTATTTAACACATTTCCCCCCCCCTAGGGCCCTAGCCCTG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATA
TTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACA
CATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_p03.b1 MSMg01no383_p03.b1 CHROMAT_FILE:
MSMg01no383_p03.b1 PHD_FILE: MSMg01no383_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:07 2005
         (350 letters)



>mm_chr14_77432682_77433431
          Length = 750

 Score =  661 bits (342), Expect = 0.0
 Identities = 348/350 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agattatgtaggcctcatcctaccacaaagcaatgcaatttacatctatgccaatgagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agattatgtaggcctcatcctaccacaaagcaatgcaatttacatctatgccaatgagat 260

                                                                       
Query: 61  aaccaccctgtattgcaaattcagaaaaccttaagtgattaacacacctaccggagtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccaccctgtattgcaaattcagaaaaccttaagtgattaacacacctaccggagtgag 320

                                                                       
Query: 121 caaccccacatgcctttttcacaggatctgcgaagacgatgggtatacagtcggcgccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaccccacatgcctttttcacaggatctgcgaagacgatgggtatacagtcggcgccaa 380

                                                                       
Query: 181 gagcagtgattgtgactcctctctgatttgtgacgatcccatcgtaagattcaggctcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcagtgattgtgactcctctctgatttgtgacgatcccatcgtaagattcaggctcct 440

                                                                       
Query: 241 tcttccccataacccacacttcactggcgtgatcagtctaacatgaaacacagagcaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tcttccccataacccacacttcactggcgtgatcagtctaacacgaaacacagagcaaaa 500

                                                             
Query: 301 tgtctggaaaatgaaacatcttacatgcgagcttttctacaagaactggt 350
           ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtctggaaaacgaaacatcttacatgcgagcttttctacaagaactggt 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)