BAC Information

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BAC

Clone NameMSMg01-384A04
Chromosome14 (Build37)
Map Location 21,900,815 - 21,901,059
singlet/doubletsinglet
Overlap geneAdk
Upstream gene1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384A04.T7 (MSMg01no384_a04.b1)MSMg01-384A04.TJ (MSMg01no384_a04.g1)
ACCAG487547AG487548
length754747
length of high quality
(start - end)
579 (34 - 612)537 (65 - 601)
definitionCHROMAT_FILE: MSMg01no384_a04.b1 PHD_FILE: MSMg01no384_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:12 2005CHROMAT_FILE: MSMg01no384_a04.g1 PHD_FILE: MSMg01no384_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCTG
AGGAATACCGAATGGCAGAGAAGCAACTGAAAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACC
TGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGTAGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCCTGTACAACCACTC
TGGAAACCAGTCTGGTGGTTCCTCAGAAAATTGGATATAGTACTACCAGA
GGATCCCGCAATACCCCTCCTGGGCATATATCCAGAAGATGTTCCAATAG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCTTTATTTATAATA
GTCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATTTACACAACAGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGGTAAATGGATGGACCTGGAGGGCATCATT
CTGAGTGAGGTAACCCAATCACAAAAGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCAGAAACTTANGATACCCAAGATATAAGATAC
AATTTGCTAAACACATGAAACTCAAGAAGAACAAAGACCAAAGTGTGGAC
ACTTTGCCCCTTCTTATAAATGGGGACAAAAACCCCTTGGAAGGAGTTAC
AGAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTACTAGTTTGCTCAACAAAGATAATAATAAATAA
TAATGCCTCCCCTATTATTGGTACTTTGTGAAAATTTAAAAAGGAGAGAG
CCTATTCCTGCACATTGTCCTCTGACACCCACACAAGTAGCACATGTGTG
CACGCACGCGCGCGCGCACGCGCACACACACACAGAACAAATAATAAATA
TATAAAAACACTTTTCTATAGCACAGAGGAACTGACTGTTTAGTGGAGCC
TTTACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTA
GACCAGGCTGGAGACTGAACCTCTTTTATCACATATGCTACACCATTGGG
CTACATTCCCTTGTAGCTGAATGTTGACAGTATAGTTACTTGCACAAACA
GCACTCAGCCTTAGAATCAGGACAGTTTTTGAGAAGTTCTCTTTCAGCTC
CTTTTCAATTAATCCTGTTCCCCTCACCACCCAGGCAGCTGCTTTCGTTC
TTCTATTAACAGTGACTAATTTGCCTATTTTGTAACTTCATATAAAGAGT
CTTGTACACTAAGGGCTACTCGAGTTTTGTTTATCATGATAATTTTGAGG
CTCCTCCATTTTGGTGTGTCAGCAGCTTATCCTTTTCGTTCCCGAAAATT
GTCCCACATTTTGTAAGGAGCATATGTGTTACTGTGTTGTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_a04.g1 MSMg01no384_a04.g1 CHROMAT_FILE:
MSMg01no384_a04.g1 PHD_FILE: MSMg01no384_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:12 2005
         (537 letters)



>mm_chr14_21900323_21901259
          Length = 937

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%), Gaps = 2/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 293 gctggagactgaacctcttttatcacatatgctacaccattgggctacattcccttgtag 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gctggagactgaacctcttttatcacatatgctacaccattgggctacattcccttgtag 552

                                                                       
Query: 353 ctgaatgttgacagtatagttacttgcacaaacagcactcagccttagaat-caggacag 411
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 553 ctgaatgttgacagtatagttacttgcacaaacagcactcagccttaga-tacaggacag 611

                                                                       
Query: 412 tttttgagaagttctctttcagctccttttcaattaatcctgttcccctcaccacccagg 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tttttgagaagttctctttcagctccttttcaattaatcctgttcccctcaccacccagg 671

                                                                       
Query: 472 cagctgctttcgttcttctattaacagtgactaatttgcctattttgtaacttcatataa 531
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 672 cagctgctttcgttcttctattaacagtaactaatttgcctattttgtaacttcgtataa 731

                 
Query: 532 agagtc 537
           ||||||
Sbjct: 732 agagtc 737



 Score =  122 bits (63), Expect = 6e-32
 Identities = 76/81 (93%), Gaps = 2/81 (2%)
 Strand = Plus / Plus

                                                                       
Query: 217 actgactgtttagtggagcctttacagggtttctctgtgtagccctggctgtcctggaac 276
           |||| ||||||||||||||||||||||||||| |||||  ||||||||||||||||||||
Sbjct: 1   actggctgtttagtggagcctttacagggtttatctgt--agccctggctgtcctggaac 58

                                
Query: 277 tcactttgtagaccaggctgg 297
           ||||| |||||||||||||||
Sbjct: 59  tcactctgtagaccaggctgg 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)