BAC Information

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BAC

Clone NameMSMg01-384J01
Chromosome14 (Build37)
Map Location 119,634,847 - 119,635,319
singlet/doubletsinglet
Overlap geneHs6st3
Upstream geneSox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2
Downstream geneLOC619601, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384J01.T7 (MSMg01no384_j01.b1)MSMg01-384J01.TJ (MSMg01no384_j01.g1)
ACCAG487971AG487972
length721723
length of high quality
(start - end)
637 (38 - 674)474 (68 - 541)
definitionCHROMAT_FILE: MSMg01no384_j01.b1 PHD_FILE: MSMg01no384_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:53 2005CHROMAT_FILE: MSMg01no384_j01.g1 PHD_FILE: MSMg01no384_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGC
ACTATGCCCATCTGGTCCCGGGCTTTTTCTGGTTGGGAGATTTTAATGTC
TGCTGCTATTTCTTTAGGGTTATGGGACTCTTTAGATGTTTTAACTGATC
CTGATTTAACTTTGGTACCTGGTATCTGTCTAGAAAATTGTCCATTTTAT
CCAGATTTTCCAGTTGTGTTAAGTATAGGCTTTTGTAGTAGGATCTGATG
ATTTTTTTAATTTCCTCAATTTCTGTTATTATATCTCCCTTTTCATTTCT
GATTTTGTTAATTTGGGTACTGTCTCTGTGCCTTCTGATTAGTCTGGCTA
AGGATTTATCTATCTTTTTTATTTTCTCAAAGAACCAGCTCCTGGTTTGG
TTGATTTTCTGTAACGTTTGTTTTGTTTCAAATTGGTTGATTTCTGCACT
GAGTTTGATTATTTCCTGCTGCCTCCTCCTGTTGGGTGTATTTGCTTCTT
TTTGTTCTAGAGCTTTCAGATGTGCTGTTAAATTTCAAGTGTATGCTTTC
TCCAGTTTCTTTTAGGAATCACATCTCATGATGATGATAGAAGAATTTAA
GAAGCATATAAATAACTCCCTTANATAAATACAAGAGAACACATGTAAAC
AGGTAGAAGACATTAAAGAGGAAAAACCAAACTCCCTTAAAGAATTACAG
AAAGCACAAGCAAACAGGTGG
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGGAGGAGGCTGCACTTGTGACTGAAAGAGCCC
TGACCTGGCTTCGGCTGCACTTTCTCCTCCCGAGCCGCACCGCACAGATG
CAAGCTTACACTGGATTCTGCATTATTATGCTCTTGGAGTCTGTTGTGTA
GCTGGCCTTGAAATCTTGATATGATTCAAAGTCTGGATGTCTTTCTACGA
AGGAGTCCTTAGTTGTGTGGACATAAAACACCCAAGGACTTAAAAAAAAG
TGCCTAAAAATATATTTGAAAATGCAGGTAAATTACATGCATCCTGAGAC
TCCCTGGGCAAGCATGTAAAAACACTTCTCAGAGGGAAACTGCCATTCCC
ATGTGCCTGCTTCCGAATACTCCTTCAAATATCTTCCTCTAATCAGATTC
TCCTGGCCAGTAAGTCCTTTCTCCTCTCTTGTAGATCTATGTGCGATTGC
TCATAACTCGAGGAGTATCTTCCTCACCTTTATTCAGAATGAGTCCACGG
GACATTTTTTTGTGTTATTATCTTTGGTGTTCCAAGTTGATGGACCCACG
ATGCTGTTAGGCACATTGGGTCGAGCGATGATGGAAGACACACTCCGATG
ATTAATACTTTCTGTGGCATAATTTTCCGTCAAGACCACTTCTGCTGCCA
GTTGCCCTATCTGTGTGTCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_j01.g1 MSMg01no384_j01.g1 CHROMAT_FILE:
MSMg01no384_j01.g1 PHD_FILE: MSMg01no384_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:53 2005
         (474 letters)



>mm_chr14_119634647_119635519
          Length = 873

 Score =  870 bits (450), Expect = 0.0
 Identities = 468/474 (98%), Gaps = 1/474 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaggaggctgcacttgtgactgaaagagccctgacctggcttcggctgcactttctcc 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaggaggctgtacttgtgactgaaagagccctgacctggcttcggctgcactttctcc 260

                                                                       
Query: 61  tcccgagccgcaccgcacagatgcaagcttacactggattctgcattattatgctcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccgagccgcaccgcacagatgcaagcttacactggattctgcattattatgctcttgg 320

                                                                       
Query: 121 agtctgttgtgtagctggccttgaaatcttgatatgattcaaagtctggatgtctttcta 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctgttgtgtagctggccttgaaatcttgatatgattcaaagtctggatgtctttcta 380

                                                                       
Query: 181 cgaaggagtccttagttgtgtggacataaaacacccaaggacttaaaaaaaagtgcctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 cgaaggagtccttagttgtgtggacataaaacacccaaggacttaaaaaaa-gtgcctaa 439

                                                                       
Query: 241 aaatatatttgaaaatgcaggtaaattacatgcatcctgagactccctgggcaagcatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 440 aaatatatttgaaaatgcaggtaaattacatgcatcctgagactccctgggcaggcatgt 499

                                                                       
Query: 301 aaaaacacttctcagagggaaactgccattcccatgtgcctgcttccgaatactccttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaaaacacttctcagagggaaactgccattcccatgtgcctgcttccgaatactccttca 559

                                                                       
Query: 361 aatatcttcctctaatcagattctcctggccagtaagtcctttctcctctcttgtagatc 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 560 aatatcttcctctaatcagattctcctggtcagtaagtcctttctcctctcttctagatc 619

                                                                 
Query: 421 tatgtgcgattgctcataactcgaggagtatcttcctcacctttattcagaatg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatgtgcgattgctcataactcgaggagtatcttcctcacctttattcagaatg 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space:   400432
Effective search space used:   400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)