BAC Information

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BAC

Clone NameMSMg01-384N06
Chromosome14 (Build37)
Map Location 88,525,510 - 88,656,958
singlet/doubletdoublet
Overlap geneLOC100043780
Upstream geneDiap3, EG665324, Tdrd3, LOC100043317
Downstream geneLOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384N06.T7 (MSMg01no384_n06.b1)MSMg01-384N06.TJ (MSMg01no384_n06.g1)
ACCAG488172AG488173
length761745
length of high quality
(start - end)		489 (36 - 524)500 (65 - 564)
definitionCHROMAT_FILE: MSMg01no384_n06.b1 PHD_FILE: MSMg01no384_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:13 2005CHROMAT_FILE: MSMg01no384_n06.g1 PHD_FILE: MSMg01no384_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,656,534 - 88,656,958)(88,525,510 - 88,526,009)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTTA
TAGATTGTGTCTCCTAGAAACAATAAGGAGTTACACCTTGAAAACTTAAG
AATGGAGCCACCTAAACAAGACCTGAATAACAGACATATCAACAGACATG
CTAAGGCACTGACAAAAGATTTCAATGTTCCACCCTGGAACAAAGACCTA
CAACCAATTCTATATGGCTTGGGGAAAGGGAATTCACCTCATTCATTGAT
GAGACTCCTAATTAATTATTTAATGCAAAATGGTCATCCCTGAAATTACA
TACACAAAAGCAACACTCAAAAGGTTCTATTTATGTATTTATGCATATAT
TTATGCTTGACCAACAATACTAATCAAAGAAACAGAGGAAAATGATTTAG
GGGTTCAAAGAACATGGAAGGAGATGGAGCGAGGTCATTTGGGAGGGGCT
GGAGAGAAGGGATACAATGATACATTAATAAAAAGAAAAATAATTTATGT
TAATTAAACTTATTTGAAATGGTCAAGACACCAGTCAATGACAAAAAGAA
AGTTATTCAATTATAAAACTTGTAAGACAGGCAATTTAAAATAATATTGT
ATCTGGAGAAGCACTTTCTTATTTGATGGTCAAGGCCAGTTCAAAAAAAA
TTAAGAATACCTGGGACAAATATTTAAAACCATTCCGGAAAGGAAAAAAT
ATTAACCCCCTCCCACCAGGTAAAACCGGGGGAATTATGAAATAAAATGC
TGGAGAGCCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGAAATTCTACTTCTTGTGAGTCTTTTAAAAGAAGG
ATCGCTTGATTCTGCATTCCAATTTGATAATGAGAATAGATTTTCAGTAA
ATTTTAATATATGATTTTTGGCTGGAGATTTTATACAGTATCCCCAATAT
GTTGATATTCTATAAAATATATATGAAATACTAAAATTATAAAAAATACA
ATTTTTACAATTGAAAAATAAAAAGTCTACAAATTTTATTTAAATTACTT
TTACTTACTATGAGTACCATGTGAAATTAGTGTGATAAGGGTAAGGTCTG
TTCAAATGTAGCTAATTTTATCCCATATTCTTCTTTCTACTTAATATCCA
ATATGAAATGCATTTACTTGAAATGAATATATGGAGCAAGACAGTTTTTA
TGACCTAAATAACAAGCCTATGTCTGATACCAAGTATCCACCTGAAATGC
AGACTTGGAGTTGTTCAGCCCATCTTTAATTAGAATTACCAAGTAGAATT
ATTGAAAAATGCTTAAATGTAGTTTCTAACTATAAACATTGGCTTTTGAG
GTGCTTTGCTCTGCGTAATTATTAATTAATGCCATTTCCAGTAAATACTA
TATGACATGTTCACACATATTGAGAGAAATGATTTAATCTATTCCTTATA
ACCCGGAGAAAATAATAGTTTTATTTCCAATTTGTGGTCTAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_n06.b1 MSMg01no384_n06.b1 CHROMAT_FILE:
MSMg01no384_n06.b1 PHD_FILE: MSMg01no384_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:13 2005
         (489 letters)



>mm_chr14_88656070_88656958
          Length = 889

 Score =  822 bits (425), Expect = 0.0
 Identities = 425/425 (100%)
 Strand = Plus / Minus

                                                                       
Query: 65  gaatggagccacctaaacaagacctgaataacagacatatcaacagacatgctaaggcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 gaatggagccacctaaacaagacctgaataacagacatatcaacagacatgctaaggcac 830

                                                                       
Query: 125 tgacaaaagatttcaatgttccaccctggaacaaagacctacaaccaattctatatggct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tgacaaaagatttcaatgttccaccctggaacaaagacctacaaccaattctatatggct 770

                                                                       
Query: 185 tggggaaagggaattcacctcattcattgatgagactcctaattaattatttaatgcaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tggggaaagggaattcacctcattcattgatgagactcctaattaattatttaatgcaaa 710

                                                                       
Query: 245 atggtcatccctgaaattacatacacaaaagcaacactcaaaaggttctatttatgtatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 atggtcatccctgaaattacatacacaaaagcaacactcaaaaggttctatttatgtatt 650

                                                                       
Query: 305 tatgcatatatttatgcttgaccaacaatactaatcaaagaaacagaggaaaatgattta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tatgcatatatttatgcttgaccaacaatactaatcaaagaaacagaggaaaatgattta 590

                                                                       
Query: 365 ggggttcaaagaacatggaaggagatggagcgaggtcatttgggaggggctggagagaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ggggttcaaagaacatggaaggagatggagcgaggtcatttgggaggggctggagagaag 530

                                                                       
Query: 425 ggatacaatgatacattaataaaaagaaaaataatttatgttaattaaacttatttgaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggatacaatgatacattaataaaaagaaaaataatttatgttaattaaacttatttgaaa 470

                
Query: 485 tggtc 489
           |||||
Sbjct: 469 tggtc 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_n06.g1 MSMg01no384_n06.g1 CHROMAT_FILE:
MSMg01no384_n06.g1 PHD_FILE: MSMg01no384_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:13 2005
         (500 letters)



>mm_chr14_88525310_88526209
          Length = 900

 Score =  967 bits (500), Expect = 0.0
 Identities = 500/500 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaattctacttcttgtgagtcttttaaaagaaggatcgcttgattctgcattccaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaattctacttcttgtgagtcttttaaaagaaggatcgcttgattctgcattccaatt 260

                                                                       
Query: 61  tgataatgagaatagattttcagtaaattttaatatatgatttttggctggagattttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgataatgagaatagattttcagtaaattttaatatatgatttttggctggagattttat 320

                                                                       
Query: 121 acagtatccccaatatgttgatattctataaaatatatatgaaatactaaaattataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagtatccccaatatgttgatattctataaaatatatatgaaatactaaaattataaaa 380

                                                                       
Query: 181 aatacaatttttacaattgaaaaataaaaagtctacaaattttatttaaattacttttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacaatttttacaattgaaaaataaaaagtctacaaattttatttaaattacttttac 440

                                                                       
Query: 241 ttactatgagtaccatgtgaaattagtgtgataagggtaaggtctgttcaaatgtagcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttactatgagtaccatgtgaaattagtgtgataagggtaaggtctgttcaaatgtagcta 500

                                                                       
Query: 301 attttatcccatattcttctttctacttaatatccaatatgaaatgcatttacttgaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttatcccatattcttctttctacttaatatccaatatgaaatgcatttacttgaaat 560

                                                                       
Query: 361 gaatatatggagcaagacagtttttatgacctaaataacaagcctatgtctgataccaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatatatggagcaagacagtttttatgacctaaataacaagcctatgtctgataccaag 620

                                                                       
Query: 421 tatccacctgaaatgcagacttggagttgttcagcccatctttaattagaattaccaagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatccacctgaaatgcagacttggagttgttcagcccatctttaattagaattaccaagt 680

                               
Query: 481 agaattattgaaaaatgctt 500
           ||||||||||||||||||||
Sbjct: 681 agaattattgaaaaatgctt 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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