Query= MSMg01no384_o19.b1 MSMg01no384_o19.b1 CHROMAT_FILE:
MSMg01no384_o19.b1 PHD_FILE: MSMg01no384_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:20 2005
(533 letters)
>mm_chr14_79627570_79628502
Length = 933
Score = 996 bits (515), Expect = 0.0
Identities = 518/519 (99%)
Strand = Plus / Plus
Query: 15 gaattccttcctctgttactttactttgctattcagaggctccacacccaagggtaattt 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattccttcctctgttactttactttgctattcagaggctccacacccaagggtaattt 274
Query: 75 cttctgttgtatccacacctatctaacttggatgtttgtttgaaaaagaaaggtggagac 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cttctgttgtatccacacctatctaacttggatgtttgtttgaaaaagaaaggtggagac 334
Query: 135 catccacatttagtctgtgagatgctggcctctcatggggacttcatgtcccgggacagg 194
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 335 catccacatttagtctgtgagatgctggcctctcgtggggacttcatgtcccgggacagg 394
Query: 195 atggactcattttatcacggagctgagctcattacaggcaggaagtaaccaagggactct 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atggactcattttatcacggagctgagctcattacaggcaggaagtaaccaagggactct 454
Query: 255 gttgacattagcagactagaggtcctatcagaccttcgtggcagattccttggattttaa 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gttgacattagcagactagaggtcctatcagaccttcgtggcagattccttggattttaa 514
Query: 315 cacaattatgttccatgaagtatttactgaatcaatgctttctcatctgtgtggccccaa 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cacaattatgttccatgaagtatttactgaatcaatgctttctcatctgtgtggccccaa 574
Query: 375 tattggtttattaacactctgagatttgtagtggcccagggccaaacactgggcattttg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tattggtttattaacactctgagatttgtagtggcccagggccaaacactgggcattttg 634
Query: 435 ttttctgtgtctagggctttctaagttacagggacttgaatccaggttacacgtggtgag 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttttctgtgtctagggctttctaagttacagggacttgaatccaggttacacgtggtgag 694
Query: 495 ttgcaaggcggttctgccaatctagacagtcaccagggg 533
|||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgcaaggcggttctgccaatctagacagtcaccagggg 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_o19.g1 MSMg01no384_o19.g1 CHROMAT_FILE:
MSMg01no384_o19.g1 PHD_FILE: MSMg01no384_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:20 2005
(521 letters)
>mm_chr14_79765994_79766914
Length = 921
Score = 905 bits (468), Expect = 0.0
Identities = 509/524 (97%), Gaps = 4/524 (0%)
Strand = Plus / Minus
Query: 1 acctaattaaaaacctaggtatggctgtgctttcccacagttctcaaattctcagtgtcc 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 acctaattaaaaacctaagtatggctgtgctttcccacagttctcaaattctcagtgtcc 637
Query: 61 cacagtctagcacagtaggtgagctggtttactgggaaagaccctgtatgaaggtaa--- 117
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 636 cacagtctagcacagtaggtgagctggtttactgggaaagaccctgtctaaaggtaatac 577
Query: 118 gacagagcgacaaaggaagacaccagatgccttgttctggctctgttcatgtgcaccttc 177
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ggcagagtgacaaaggaagacaccagatgccttgttctggctctgttcatgtgcaccttc 517
Query: 178 acacaggtgcatatgccgcacagcacacacctcacacacaaaggcagctttcagtctatg 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 acacaggtgcatatgccacacagcacacacctcacacacaaaggcagctttcagtctatg 457
Query: 238 acaaatgaatgggctgatttttacatattacctacttgatatcgaaatagtgaaatgaag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acaaatgaatgggctgatttttacatattacctacttgatatcgaaatagtgaaatgaag 397
Query: 298 tgggctcctatgagaaaaatttaaattttaaattatttttgtgtgtataaagtatgagta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgggctcctatgagaaaaatttaaattttaaattatttttgtgtgtataaagtatgagta 337
Query: 358 caggtgtgcacatgccaagacacttttgtgaaagtcaaaggacaacttttggaagttgat 417
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 336 caggtgtgcacatgccaagacacccttgtgaaagtcaaaggacaacttttggaagttgat 277
Query: 418 tatctttttatcataggttcaaggggttgacttgggacattgaacttatgaggcaagtct 477
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 276 tatctttttatcataggttcaaggggttgacttgggacattgaacttgtgaggcaagtcc 217
Query: 478 ggacccactgagctgtcttgctagtcccaaattgtcatttttga 521
||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 216 agacccactgagctgtcttgctagtcccaaattgtc-tttttga 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
