Query= MSMg01no385_i22.b1 MSMg01no385_i22.b1 CHROMAT_FILE:
MSMg01no385_i22.b1 PHD_FILE: MSMg01no385_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:09 2005
(451 letters)
>mm_chr14_23021997_23022847
Length = 851
Score = 702 bits (363), Expect = 0.0
Identities = 436/483 (90%), Gaps = 40/483 (8%)
Strand = Plus / Plus
Query: 5 gaattcaggtcctctagaagagttggaagtattcttaattgtggagtcatttctgaagtc 64
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 180 gaattcaggtcctctagaagagttggaagtcttcttaattgtggagtcatttctgaagtc 239
Query: 65 tctttattaaacaaaacaa---aacaa--caaa-c-------------------caaaac 99
||||||||||||||||||| ||||| |||| | ||||||
Sbjct: 240 tctttattaaacaaaacaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaac 299
Query: 100 aaaacaaaacatctacaagtaaagcgaatctggccatcttagtagttctcagttacatgt 159
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 300 aaaacaaaacatctacaagtaaagccaatctggccatcttagtagttctcagttacatgt 359
Query: 160 ctgtaatgaggggggaactgattgttgattcgtgggctcactgcctgtggattttttttt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctgtaatgaggggggaactgattgttgattcgtgggctcactgcctgtggattttttttt 419
Query: 220 ttttttttttttttttgggggggtgagtcctttg-----------agttgcattctgttt 268
|||||||||||| || | | ||||||||||| |||||||||||||||
Sbjct: 420 tttttttttttt----ggtgtgttgagtcctttgccctgactttgagttgcattctgttt 475
Query: 269 ctgttgctgctgaacttggagtcctctatgtattctgaggactaatcccatgtccagcac 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ctgttgctgctgaacttggagtcctctatgtattctgaggactaatcccatgtccagcac 535
Query: 329 aaggtttgcaactcttttccctcttctgtggaagacttttcactttgttggtagtgtcta 388
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 536 agggtttgcaactcttttccctcttctgtggaagacttttcactttgttggtagtgttta 595
Query: 389 ccacactagatatgcaaacttttgattttggcaaaataccaattctcccttttctgttgc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ccacactagatatgcaaacttttgattttggcaaaataccaattctcccttttctgttgc 655
Query: 449 cta 451
|||
Sbjct: 656 cta 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_i22.g1 MSMg01no385_i22.g1 CHROMAT_FILE:
MSMg01no385_i22.g1 PHD_FILE: MSMg01no385_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:09 2005
(508 letters)
>mm_chr14_23187340_23188247
Length = 908
Score = 967 bits (500), Expect = 0.0
Identities = 506/508 (99%)
Strand = Plus / Minus
Query: 1 attgatctctgctttctgactacagataccatgtgaccaggttgcatcaaactcctgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 attgatctctgctttctgactacagataccatgtgaccaggttgcatcaaactcctgtct 827
Query: 61 ccataaaatccctgcagtgatggactgtacaccctcaaactgtgagttgaaacaaagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ccataaaatccctgcagtgatggactgtacaccctcaaactgtgagttgaaacaaagcct 767
Query: 121 ttcttctagaggttgctaagctcaatgttttgtcacagcaaggaaacaagtaactaatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ttcttctagaggttgctaagctcaatgttttgtcacagcaaggaaacaagtaactaatcc 707
Query: 181 cggagccttgttgggaaaaggtgagtcagtcctcctggccacccaagggctatctgtaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cggagccttgttgggaaaaggtgagtcagtcctcctggccacccaagggctatctgtaac 647
Query: 241 atcacctctagagactcaccccaaaccactgacatgcctagaacaccagcggcggcccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atcacctctagagactcaccccaaaccactgacatgcctagaacaccagcggcggcccag 587
Query: 301 ctgccaacacaatgaccagtcatctccaaattccaccagagaaagatgtttaggggaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctgccaacacaatgaccagtcatctccaaattccaccagagaaagatgtttaggggaaca 527
Query: 361 ttggacaccatccttggcatctctctaggcagccccttttgacagtcgggaagttcaagg 420
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 526 ttggacaccatcgttggcatctctctaggcagccccttttgacagtcaggaagttcaagg 467
Query: 421 tgcatgtatgagcatttgcagagaatcactgaaaactaaaagcattttccaaaagtacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgcatgtatgagcatttgcagagaatcactgaaaactaaaagcattttccaaaagtacac 407
Query: 481 aagcaacataccatctcactactgaaca 508
||||||||||||||||||||||||||||
Sbjct: 406 aagcaacataccatctcactactgaaca 379
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
