BAC Information

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BAC

Clone NameMSMg01-385M18
Chromosome14 (Build37)
Map Location 82,371,230 - 82,371,726
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385M18.T7 (MSMg01no385_m18.b1)MSMg01-385M18.TJ (MSMg01no385_m18.g1)
ACCAG488913AG488914
length748837
length of high quality
(start - end)		500 (34 - 533)219 (64 - 282)
definitionCHROMAT_FILE: MSMg01no385_m18.b1 PHD_FILE: MSMg01no385_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:28 2005CHROMAT_FILE: MSMg01no385_m18.g1 PHD_FILE: MSMg01no385_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTTCTG
CATTTTAAACAAATCACTGCTAATTTAGGATATCTGACAGAAAAGCAAGC
TGTGATTGGAAATTTTAATCATGTCCATATATCAATTTATCATATCAGGG
AATATAATAATCACTGATTCGCTGTTTAGTATTATCATATAAATATTCAT
GTGATTAGTAATTTTAAACATCAGTGGCAATAATGCTAAGTAACAATGTA
ATATAAAATGAGTTGTGATGCCAGCATTTCCTAATATGAATCAGACTAGA
GGCTGCTAAGGATTTTAGAACAGATATCAATTGAATTTGGAAAACATATT
TAGGCTTATAAATCCACTCTATGAATCTTTTATTTTTCCTGTTGTATTAT
GTTTCGAGCCATTTCCTCTACCAAATTCATGTGCTTTTCTGGCACATTGT
TTTAATATGGTTTATTTTGACTTTTTAATGAGAATTTTATACATGTATAT
CATGATAAAAGTCACACCATATTCCTCCCTATACAATTCCCCTCATATGC
TCCAACATTTTTCCTTACAAACTTTCTGTGCTCTTTCATATAGGAGAGCA
CCTACTCATGCCTAGTTGTGCTTTTTGAAACCATAAAACCCCCAATGGGG
ATCATTTCTGGGCTAACCTTAAAAACTAATAAATTTTCTTCCCCGGATTC
CTTCCACTATAATACCAATTCTCAATATAATTGGGCAAATTAATAAAA

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCAAATATACGCATGTGATCCTGGGCATGTTTTGGTT
GGGAGACTTTAATAACTGCTTCTATTTCTTTAGTGCTTATAGGACTGTTT
AGATGGATTATCAGATACTGACCTAACTTTGGCACCTGGTATCTGTCTAG
AAAAGTGTTCATTTCATACAGATTTTCCTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTNAGNATAGGCTTTTGTAGTAGGATCTGTGATGTTTTG
GATTTTTTTTTTTAAATTAATTGGAGAGAAGATATTGTCTTCTGTTTTAT
TTTTTTTATTTATTATTTTTTGCCCCGTTCGATATTTATTTGGCAACCTC
CCCTCCCACTTTTTTTTTCCCCCATTATCCTTTTCTCTCTGTTTCCTTTT
ACCCCTTGCTTTATAGACTTTTTTTCCCCTTATTCCTCTATCTCTCCTTC
CTTTATTTCCTCTATTTCTCTTTTTTCCCTGCTTTATTTTTTCTTCTTTA
TCCTCTCCTCTTCCCCTTTTTCTGTTTTTTCTTATCTTATTATTACTACC
CACCTCCTTCCTTTTTTTTCTCCTCTTTTTCTTGGATACTTGTATATCTC
TACTATTCTTATTATTCCTTTTTCCCCTTTCTTTCATACTTGTCTGCTAT
CTTTCTTATTTCCCTCACCCTCCGGCTTCTCTTTCTTTGTTTCTTATCCC
CCCTCTCCATTTCTTTTTTCTACTTTTTTTCTTTTCTGTTTCCCTCTCGC
TTTTTTGTTTTACTACTCGTCTTCTTATATGGCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_m18.b1 MSMg01no385_m18.b1 CHROMAT_FILE:
MSMg01no385_m18.b1 PHD_FILE: MSMg01no385_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:28 2005
         (500 letters)



>mm_chr14_82371027_82371926
          Length = 900

 Score =  938 bits (485), Expect = 0.0
 Identities = 494/497 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgttctgcattttaaacaaatcactgctaatttaggatatctgacagaaaagc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgttctgcattttaaacaaatcactgctaatttaggatatctgacagaaaagc 263

                                                                       
Query: 64  aagctgtgattggaaattttaatcatgtccatatatcaatttatcatatcagggaatata 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 264 aagctgtgattggaaattttaatcatgtccatatatcaatttatcatatcagcgaatata 323

                                                                       
Query: 124 ataatcactgattcgctgtttagtattatcatataaatattcatgtgattagtaatttta 183
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 ataatcactgattcgctgtttagtgttatcatataaatattcatgtgattagtaatttta 383

                                                                       
Query: 184 aacatcagtggcaataatgctaagtaacaatgtaatataaaatgagttgtgatgccagca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacatcagtggcaataatgctaagtaacaatgtaatataaaatgagttgtgatgccagca 443

                                                                       
Query: 244 tttcctaatatgaatcagactagaggctgctaaggattttagaacagatatcaattgaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttcctaatatgaatcagactagaggctgctaaggattttagaacagatatcaattgaat 503

                                                                       
Query: 304 ttggaaaacatatttaggcttataaatccactctatgaatcttttatttttcctgttgta 363
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 ttggaaaacatatttaggcttataaatcctctctatgaatcttttatttttcctgttgta 563

                                                                       
Query: 364 ttatgtttcgagccatttcctctaccaaattcatgtgcttttctggcacattgttttaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttatgtttcgagccatttcctctaccaaattcatgtgcttttctggcacattgttttaat 623

                                                                       
Query: 424 atggtttattttgactttttaatgagaattttatacatgtatatcatgataaaagtcaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atggtttattttgactttttaatgagaattttatacatgtatatcatgataaaagtcaca 683

                            
Query: 484 ccatattcctccctata 500
           |||||||||||||||||
Sbjct: 684 ccatattcctccctata 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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