BAC Information

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BAC

Clone NameMSMg01-386B05
Chromosome14 (Build37)
Map Location 97,108,715 - 97,109,397
singlet/doubletsinglet
Overlap genenone
Upstream gene4921530L21Rik, Klhl1, LOC100043366
Downstream geneLOC668654, EG668659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386B05.T7 (MSMg01no386_b05.b1)MSMg01-386B05.TJ (MSMg01no386_b05.g1)
ACCAG489127AG489128
length740744
length of high quality
(start - end)
686 (45 - 730)673 (72 - 744)
definitionCHROMAT_FILE: MSMg01no386_b05.b1 PHD_FILE: MSMg01no386_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:49 2005CHROMAT_FILE: MSMg01no386_b05.g1 PHD_FILE: MSMg01no386_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTATCTATATCAAGCTGACCTCTAACTCACAAATATCAATCAGCC
TTATAATTTCTGGGATTTAAGGTATGCACTACCATGTCAAACAACCAATG
TTTTCTTAAAATCAGTATTTAAATTTGTAGAATATCCTCTCCAGTTTTAT
GAGCAAAACATTTTTTTGTATCATTTACTATATAACAATCCTATTAGCAG
AGTTACCAAGAGAAAACTCTCTTGTGACCCAAGTTAATTAAAATCTTAAT
GTACACCTATAAGAAGCAAGTCTTCAAAAAGCTCTTCAGGCAACTATTCT
TTATGTAATTAAAAGAGCATCTTTGTTATAGAGATTTTAATTTCTTTCAC
TCTATTTTAGAGGACCCAAATCATTTGACAATGGCTATTTACACTCTGTC
TTTTGTTTTAGGATTTTTGATTTATTAACAAAAATATAATAAGATGAAAT
GAAAATGATCATATTGAAGTTTACAATTCAAGCCAACAGCAAAATAAAAG
AATCCTAAAAAAAGGCCCAGATTCAGAGATCCCCTCATTTGAATATTCAT
AAGTCTCATAAAAGTACAAGCTGAATGCTATAGGACCTGAATCAGACCTG
TGTTGACTCTGATTGTTTCCCCAGAATTTATAAGTTCATATGAGCTTTGC
TCTGTTGTTTTAGAAGGCCTTGTCTTCCTGAAAGCCTCTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAATGTCAGCAAAGT
TGCTGGATACAAAATTAACTCAAACAAATCAGCCTTCCTCTACTCAAAGA
ATAAACAGGCTGAGAAAAAAAAAATTAGGGAAATAACACCACTCACAATC
ACCACAAATAATATAAAATACCTTGGTGTTACTCTAACCAAGCAAGTGAA
AGATTCATATGACAAGAACTTCAAGTCTCTGAAGAAAGAAATTGAAGAAG
AGCTAAAAATGGAAGTATCTCCCATGCTCATGGATTAGCAGGATCAATAT
AGTAAAAATGGTTATCTTGCCAAAAGCAATCTACAGATTCAATGAAAGCT
CCATCAAAATTCCAATCCAATTCTTCATAGAGTTAGAAAAAGCAATTTGC
AAATTCATTTGTAATAACAAAAAACTCAGGATAGCAAGAACTCTTCTTAA
CAATAAAAAGAACATCTGGGGGAATCACTGTCCCTGACCTCAAGCTGTAT
TACAGGGCAATAGTGATAAAAACTGTATAATGTCGGTAAAGTGACAGGCA
GGTAGATCAACAGAATAGAATTGAAGACCCAGAAATAAATCCACACACCT
ATGGTCACTTGATCTTTGAAAAAGGAGCTAANAACCATACAGAAAACAAA
TCAAAACAAAACAAAACAAAAACAAAAACATGTTCAACAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_b05.b1 MSMg01no386_b05.b1 CHROMAT_FILE:
MSMg01no386_b05.b1 PHD_FILE: MSMg01no386_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:49 2005
         (686 letters)



>mm_chr14_97108671_97109756
          Length = 1086

 Score = 1307 bits (676), Expect = 0.0
 Identities = 682/684 (99%), Gaps = 2/684 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactatctatatc-aagctgacctctaactcacaaatatcaatcagccttataa 62
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ggaattcactatctata-caaagctgacctctaactcacaaatatcaatcagccttataa 669

                                                                       
Query: 63  tttctgggatttaaggtatgcactaccatgtcaaacaaccaatgttttcttaaaatcagt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttctgggatttaaggtatgcactaccatgtcaaacaaccaatgttttcttaaaatcagt 609

                                                                       
Query: 123 atttaaatttgtagaatatcctctccagttttatgagcaaaacatttttttgtatcattt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 atttaaatttgtagaatatcctctccagttttatgagcaaaacatttttttgtatcattt 549

                                                                       
Query: 183 actatataacaatcctattagcagagttaccaagagaaaactctcttgtgacccaagtta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 actatataacaatcctattagcagagttaccaagagaaaactctcttgtgacccaagtta 489

                                                                       
Query: 243 attaaaatcttaatgtacacctataagaagcaagtcttcaaaaagctcttcaggcaacta 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 attaaaatcttaatgtacacctataagaagcaagtcttcaaaaagctcttcaggcaacta 429

                                                                       
Query: 303 ttctttatgtaattaaaagagcatctttgttatagagattttaatttctttcactctatt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttctttatgtaattaaaagagcatctttgttatagagattttaatttctttcactctatt 369

                                                                       
Query: 363 ttagaggacccaaatcatttgacaatggctatttacactctgtcttttgttttaggattt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttagaggacccaaatcatttgacaatggctatttacactctgtcttttgttttaggattt 309

                                                                       
Query: 423 ttgatttattaacaaaaatataataagatgaaatgaaaatgatcatattgaagtttacaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttgatttattaacaaaaatataataagatgaaatgaaaatgatcatattgaagtttacaa 249

                                                                       
Query: 483 ttcaagccaacagcaaaataaaagaatcctaaaaaaaggcccagattcagagatcccctc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttcaagccaacagcaaaataaaagaatcctaaaaaaaggcccagattcagagatcccctc 189

                                                                       
Query: 543 atttgaatattcataagtctcataaaagtacaagctgaatgctataggacctgaatcaga 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 atttgaatattcataagtctcataaaagtacaagctgaatgctataggacctgaatcaga 129

                                                                       
Query: 603 cctgtgttgactctgattgtttccccagaatttataagttcatatgagctttgctctgtt 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 cctgtgttgactctgattgtttccccagaatttataagttcatatgagctttgctctgtt 69

                                   
Query: 663 gttttagaaggccttgtcttcctg 686
           ||||||||||||||||||||||||
Sbjct: 68  gttttagaaggccttgtcttcctg 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)