BAC Information

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BAC

Clone NameMSMg01-386G15
Chromosome14 (Build37)
Map Location 66,834,884 - 66,835,109
singlet/doubletsinglet
Overlap genePtk2b
Upstream geneFzd3, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2
Downstream geneLOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386G15.T7 (MSMg01no386_g15.b1)MSMg01-386G15.TJ (MSMg01no386_g15.g1)
ACCAG489387AG489388
length756757
length of high quality
(start - end)
226 (93 - 318)75 (76 - 150)
definitionCHROMAT_FILE: MSMg01no386_g15.b1 PHD_FILE: MSMg01no386_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:13 2005CHROMAT_FILE: MSMg01no386_g15.g1 PHD_FILE: MSMg01no386_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGAGAAATTACGATGTCTCTGGGGTCAGGTGAAGCAGAAAAGG
GGAGCACAAGGCTGAGCTCACAAGGGTGGATACATCTTGGGACTAGACTG
ACAGAAAGGAGAATATGTGTTCTAGAAGTCTATCTGAATTTGTATACCTG
TCTCTATGTATACCTCTCTCTCTTTATATGTAACCCCCCTCTCTCAATAA
TCCCTCTATGTATAGTGGACCCTAGTGTTCTACCCTACAGTATCAATCCA
TATAAATTCTTCTTGAAGGAATTCTGATGTTATTTGATGGGTGTCTGCAG
GAAGCACCCCCAGGAGCGTAGAACAATGTGGCATTGAAGGAAAGACAGGC
GAAAAGGGTACTGTGCTGAGAACCGAATCTTGTACAAGCCCCCTTTCAAT
CCTCTGGGAACTGGAGGGGACTGGGGAGCCCAGGATGGACCGACCACATC
TCACTCAGAGAAAGGGAGAGCTGGTAGCATGTCTACTCCACTTCATATGC
TCAGTGTTCTTGGCAGATCTTGTCAGTTCTGCACAAGGTAGATGCCAGAA
AGCCTTTACGCAAAGATGCTCAACAGGCAGCTGGAAGATGACGGAGAATA
CTGAAGTGGCTAGGCCTGATGGTGCCCAGGAGGGATGATGGCAATGGTAC
CTTAGGATTGGTAAGATGGGCGGGCCAATTTCTTTGTTCCAAATTTCCTC
TTTTTT
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAGAGCATCAAGCAGATGGTTAACACCCCTCATT
AGGAGTAGGAGCTTATTCATAAAATACAGTTATTCATTTCATTTGACACA
CACAAAAAATCAAACATGGAGAATTGAAACATAATTCCAAATACACTTTT
TAAAAAAGGAACAGGTGGGATAGCATTGAAAATGTAAACGAGGAAAATAC
CTAGTTAAAAAAAAAAGAAAAGAAAAGGAACAGGTTTTGTGATTAAGGTG
AATGTAACATCCTGAGTTACCCCTCCTAATCTTCTATTACTTGGGAATGT
TACCTTTGATGGAGGCTCTGATAATGACTACAATGTTTCTTTTTTTAATT
GTCTTTTGCCCAATTGCGTTTCTGTACTGTATGATAATCACTCTGTAATG
CTAATGCATCAACCAGCTTTTATTATGAGTCCTGCACATTTATCTGCACT
GTGGCATTCTGAAAAAGGCTCACAAATATTGCAAGAATTAGATGATGCTC
TGGCAAGGAGCAAACGTATGGCTGGGTCAATCATTGCTGGTATAGTTGCT
TTCATAAATCTTATAGCCAGTGCTACCAGATCTGGATTAGCTTTACCACA
AGAGGTATAAACAGCTAGTTAACCATCTTGCATAATATGTAACCGATGCC
CTAAGGATACAAGAATTTAGATATATGGCTAGAACCAAGATGAACTCATT
ATATGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_g15.b1 MSMg01no386_g15.b1 CHROMAT_FILE:
MSMg01no386_g15.b1 PHD_FILE: MSMg01no386_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:13 2005
         (226 letters)



>mm_chr14_66834684_66835309
          Length = 626

 Score =  429 bits (222), Expect = e-125
 Identities = 225/226 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaaggggagcacaaggctgagctcacaagggtggatacatcttgggactagactgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaaggggagcacaaggctgagctcacaagggtggatacatcttgggactagactgac 260

                                                                       
Query: 61  agaaaggagaatatgtgttctagaagtctatctgaatttgtatacctgtctctatgtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaggagaatatgtgttctagaagtctatctgaatttgtatacctgtctctatgtata 320

                                                                       
Query: 121 cctctctctctttatatgtaacccccctctctcaataatccctctatgtatagtggaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctctctctttatatgtaacccccctctctcaataatccctctatgtatagtggaccc 380

                                                         
Query: 181 tagtgttctaccctacagtatcaatccatataaattcttcttgaag 226
           |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tagtgttctaccctacagtaacaatccatataaattcttcttgaag 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)