Query= MSMg01no386_m14.b1 MSMg01no386_m14.b1 CHROMAT_FILE:
MSMg01no386_m14.b1 PHD_FILE: MSMg01no386_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:40 2005
(380 letters)
>mm_chr14_67742328_67743107
Length = 780
Score = 665 bits (344), Expect = 0.0
Identities = 371/380 (97%)
Strand = Plus / Plus
Query: 1 ttcctctttgttgtacaaactccacccaagataacctcagccagcggtgatggtgtgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttcctctttgttgtacaaactccacccaagataacctcagccagcggtggtggtgtgtga 260
Query: 61 aagcaatcctagcacacaggaggtggaaacaggagttcaaggccaacctgaactacatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcaatcctagcacacaggaggtggaaacaggagttcaaggccaacctgaactacatag 320
Query: 121 caagttcaaaggcagtctcagctgagatcctatctcaaacaaactaaaaaacagaaccaa 180
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 321 caagttcaaaggcagtctcagttgagatcctatctcaaacaaactaaaaaacagaaccta 380
Query: 181 aaagatgtctttttcctaaaagaacttgaaactatagtgtagtgatctgtcctgagaaat 240
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 381 aaagatgtctttttcctaaaaggacttgaaactatagtgtagtgatctgtcctgagaagt 440
Query: 241 gtgacattttactgtctgccatgcttacactaatgggcaaatattggcatcctttctaag 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgacattttactgcctgccatgcttacactaatgggcaaatattggcatcctttctaag 500
Query: 301 caatggtggggtggggtccagctaagaactgtccatcaactcttacttacacaatgagag 360
||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct: 501 caatggtggggtggggtccagctaagaactgtccatcaactcttacttagagaaggagag 560
Query: 361 agttgcttaaggagaaggag 380
||||||||||||||||||||
Sbjct: 561 agttgcttaaggagaaggag 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_m14.g1 MSMg01no386_m14.g1 CHROMAT_FILE:
MSMg01no386_m14.g1 PHD_FILE: MSMg01no386_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:40 2005
(589 letters)
>mm_chr14_67929035_67930021
Length = 987
Score = 975 bits (504), Expect = 0.0
Identities = 577/620 (93%), Gaps = 38/620 (6%)
Strand = Plus / Minus
Query: 1 ccatctctcctggcactaatttcctagtccatctataaactggagggtgaaaacattacc 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 649 ccatctctcctggcactaatttcctcgtccatctataaactggagggtgaaaacattacc 590
Query: 61 tgtttctcggggttgtggtaagcgtccacgggctgatgtgttaagcagagcttactttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tgtttctcggggttgtggtaagcgtccacgggctgatgtgttaagcagagcttactttgg 530
Query: 121 gggctaatacacagaaaatgttggccactattatttattattctcacaacaggacttagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gggctaatacacagaaaatgttggccactattatttattattctcacaacaggacttagg 470
Query: 181 aaaagatttttatgagtcctggaatcaacaaggaagtggccacacagagagatggcaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aaaagatttttatgagtcctggaatcaacaaggaagtggccacacagagagatggcaaaa 410
Query: 241 taacacagctctcttttcatgccattgcttcttcagactcctgacctgcttaggaaagga 300
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 taacacagc-c-cttttcatgccattgcttcttcagactcctgacctgcttaggaaagga 352
Query: 301 agaccccccc-acacacacacatcacacaggcatacacacacacacacacacacacacac 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agaccccccccacacacacacatcacacaggcatacacacacacacacacacacacacac 292
Query: 360 a------------------------gtccagaggcagatgtaaaccgtagagctagctga 395
| | |||||||||||||||||||||||||||||||||
Sbjct: 291 acacacacacacacacacacacagagcccagaggcagatgtaaaccgtagagctagctga 232
Query: 396 gga-gagctat-cc----accctctgtggtctcctgataaacctgaaagctacctctaga 449
| | | || || ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 231 g-atg---taaaccgtagacc-tctgtggtctcctgataaacctgaaagctacctctgga 177
Query: 450 ttggctgtggagtctcccatcctggagtgatacccaagaaggcatgcgtgcatgtctgtt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ttggctgtggagtctcccatcctggagtgatacccaagaaggcatgcgtgcatgtctgtt 117
Query: 510 ccctgctcctccattcactacgacaggagccttcatccgctccgccttctgggagtgcct 569
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ccctgctcctccattcactccgacaggagccttcatccgctccgccttctgggagtgcct 57
Query: 570 gtcggtctccgagcctggct 589
||||||||||||||||||||
Sbjct: 56 gtcggtctccgagcctggct 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 987
Length adjustment: 10
Effective length of query: 579
Effective length of database: 977
Effective search space: 565683
Effective search space used: 565683
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
