BAC Information

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BAC

Clone NameMSMg01-387C03
Chromosome14 (Build37)
Map Location 99,992,721 - 100,196,478
singlet/doubletdoublet
Overlap geneLOC668672
Upstream geneLOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
Downstream geneEG546623, Klf12, LOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387C03.T7 (MSMg01no387_c03.b1)MSMg01-387C03.TJ (MSMg01no387_c03.g1)
ACCAG489938AG489939
length779764
length of high quality
(start - end)
218 (66 - 283)420 (84 - 503)
definitionCHROMAT_FILE: MSMg01no387_c03.b1 PHD_FILE: MSMg01no387_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:05 2005CHROMAT_FILE: MSMg01no387_c03.g1 PHD_FILE: MSMg01no387_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,196,261 - 100,196,478)(99,992,721 - 99,993,140)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCAACCACATTATCAGGGTGGAGAATTTATTGTGGGGGCGATTAAAAATT
ACATCAGAGAAATAATGATCCGTCCTTTAATGACTCTCCTTTGTAGTGAG
CTTAGATCAATATCAACTGTTTGTTTTATTTGAGCTCTTCGATTTTTCCC
TCTTAAAGAAGATATTGCGTGACCATGCAAGCTCAAGAACTAGGGGAAAC
TCACAAGTGTTTGGCAGGAAAGGGGAAAGTAGGCGATAAAATTGTGCCAC
ACGTTTGGTCCTTGCAAAGAAATACTTGCAATGCAAACCACCCAACCAAC
CACCAAGAATGGAAACTGAAATCAGATTCTCCTTTGTCTAATTCTTACAA
AAGCATGGTAAACTCATATAAAGAGGCCAAGGAAATAGAAAAGCTTGAGG
TTGTGAACCAGATTATGTTAAATGAATTTCCTTAGCGTCCCTTTTGAGGG
CAGCCCTTCCGCGAAGTGACTTAATTACTACCACTTTTAACCTTCCCCCG
AGTTCTCCATGGTTAGCGGCAGCATTTTTACTACTACCGCCGTCCCACTT
TCCTGCCCCACAAACTGCCCCCTCGCTCACTGCCCCTTTAAACCCCAAGG
ATGCCCCTGGACCTAAACCCCCCTTTCCCGTCCCCCCCCCCTTCTGAAAT
ATATCTTTCTACCCCCACCCCCCACCCTCTTTCCTTATGTCTGTTTCTTC
ACCCCCCCCCTTCCCCTGTTTTCTCCCGN
CCCCCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACTGAGGAGAAGA
TGGTGAGGTCACTTCTAGGTTTGCATTTCTGTGACAATTCATGTTCAGGA
AGATGTTTGCATGCACGAATTCAGACCCTGTTCATTATCAGTGTGAAGAT
TACTTCAGGAACCCCTGAGTTCCAGGGCAAATTCTGCTTGCAGCCCTGTG
ACTTATGACATGTGACTTGCTCATTGCCTCAGTATCTCAAGTTCCTTATA
TAATGTGATGTAAAATAACAGAGAGAGCCAAGTATTCTCTAAGATCTTTA
GTATACTTAAAAAATCTGTTTCAGAGTGGAACACCACACTATTAACTGTC
TAAATAATCACACTCCCTTCCTCCCAAAAAGCAAAGCAAAACAAAAAAAC
CAACAGATACAGAAGCAACTCTGTTGTCGGGGACAGAGCCTGTATTATCT
TCCAGAACAGACATACTTTGCCTGAGGAGGGGATCTGACATCTGGTACCC
ACCGCCTGCCGTCGTCGTTTCTTGTAGAACTGCTCGCTTCTCTGAGCTGT
CCGCTCACGCTCCTCCTCGATTTCGCTATCATCGCTTTCTGCTGCTCCTA
TTTCTGCTGATTCTTCCCGTACTCCTTTGTTCTACTACCCCTACTCATTC
TACAATTCCTTCTCCCCCTCTCCTTCCTCCCTTACCTGCTATTTTTCCCC
TCCCCCTCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_c03.b1 MSMg01no387_c03.b1 CHROMAT_FILE:
MSMg01no387_c03.b1 PHD_FILE: MSMg01no387_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:05 2005
         (218 letters)



>mm_chr14_100196061_100196678
          Length = 618

 Score =  422 bits (218), Expect = e-122
 Identities = 218/218 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggtggagaatttattgtgggggcgattaaaaattacatcagagaaataatgatccgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gggtggagaatttattgtgggggcgattaaaaattacatcagagaaataatgatccgtcc 359

                                                                       
Query: 61  tttaatgactctcctttgtagtgagcttagatcaatatcaactgtttgttttatttgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tttaatgactctcctttgtagtgagcttagatcaatatcaactgtttgttttatttgagc 299

                                                                       
Query: 121 tcttcgatttttccctcttaaagaagatattgcgtgaccatgcaagctcaagaactaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcttcgatttttccctcttaaagaagatattgcgtgaccatgcaagctcaagaactaggg 239

                                                 
Query: 181 gaaactcacaagtgtttggcaggaaaggggaaagtagg 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaaactcacaagtgtttggcaggaaaggggaaagtagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no387_c03.g1 MSMg01no387_c03.g1 CHROMAT_FILE:
MSMg01no387_c03.g1 PHD_FILE: MSMg01no387_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:06 2005
         (420 letters)



>mm_chr14_99992521_99993340
          Length = 820

 Score =  804 bits (416), Expect = 0.0
 Identities = 419/420 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggactgaggagaagatggtgaggtcacttctaggtttgcatttctgtgacaattcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggactgaggagaagatggtgaggtcacttctaggtttgcatttctgtgacaattcatg 260

                                                                       
Query: 61  ttcaggaagatgtttgcatgcacgaattcagaccctgttcattatcagtgtgaagattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaggaagatgtttgcatgcacgaattcagaccctgttcattatcagtgtgaagattac 320

                                                                       
Query: 121 ttcaggaacccctgagttccagggcaaattctgcttgcagccctgtgacttatgacatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaggaacccctgagttccagggcaaattctgcttgcagccctgtgacttatgacatgt 380

                                                                       
Query: 181 gacttgctcattgcctcagtatctcaagttccttatataatgtgatgtaaaataacagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacttgctcattgcctcagtatctcaagttccttatataatgtgatgtaaaataacagag 440

                                                                       
Query: 241 agagccaagtattctctaagatctttagtatacttaaaaaatctgtttcagagtggaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagccaagtattctctaagatctttagtatacttaaaaaatctgtttcagagtggaaca 500

                                                                       
Query: 301 ccacactattaactgtctaaataatcacactcccttcctcccaaaaagcaaagcaaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacactattaactgtctaaataatcacactcccttcctcccaaaaagcaaagcaaaaca 560

                                                                       
Query: 361 aaaaaaccaacagatacagaagcaactctgttgtcggggacagagcctgtattatcttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 aaaaaaccaacagatacagaagcaactctgttgtcggggacagagcctggattatcttcc 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)