BAC Information

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BAC

Clone NameMSMg01-387G18
Chromosome14 (Build37)
Map Location 58,279,853 - 58,280,225
singlet/doubletsinglet
Overlap geneXpo4
Upstream geneLOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2
Downstream geneLats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387G18.T7 (MSMg01no387_g18.b1)MSMg01-387G18.TJ (MSMg01no387_g18.g1)
ACCAG490158AG490159
length757844
length of high quality
(start - end)
377 (44 - 420)57 (75 - 131)
definitionCHROMAT_FILE: MSMg01no387_g18.b1 PHD_FILE: MSMg01no387_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:28 2005CHROMAT_FILE: MSMg01no387_g18.g1 PHD_FILE: MSMg01no387_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAGAGATTCACCTGCCTCTGCCTCCCAAGTAAGTGCTGGGATTAAA
GGCATGTGCCATCACACTTGGCCACCAAGAACATTTTTAAAGCAAAAATG
AAGGGTCTTCAGACTTGATGTGCCACTTACTAAAGTGTGTATAGAAACTA
CCATAATTGAACTGTTAGTGCACTGTCATAGAAAAGAATAGAAAGTTGTG
CCAGGCAGTGGTGACACACACCTTTAGTCCCAGCACTTGGGAGGCAGAGG
CAGGTGGATTTCTGAGATGGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA
GGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCTCCCAAAA
GAAAAAGAACAAAGAATAGGAAGCTGTATCAGGATGGTCCCACGCAAGTA
AATAGGACGGTGCTTCCCGACTGTCCCATGAGGGGAAGTAAACTCTGCTA
ATAGAATTCAAAATATGACCAATTGTGGCCAAAGCGTGCCACTGAACTCC
CAAAACCCTTAAACGTCCCCCTTTTTTTTTCCCCGCCATTTCACTTGCCA
AAACCACTCCCATCCCTAACCCAAAATGCAATCCATGCATACCCTATGAT
CTTCTCTGAACTCACTTCCATTCGTTCTTCCTTCCCCCTCCCCTCTCCCT
TTCTTCCCTACTTCCCCCTCTCCCCTCCCTCCTTACCAGTTCTTCCCACC
TTCCCCT
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAAGCCAGGGTTATACAGAGA
AACCCTGTCTCGGGTGGGGGGTGGGGGAGATANNNNTNCNTNNNNNNGTN
TTTNNTTTTCTTTCCTTTCGGGGCGTGGGGTTTCTGTCTGTTTTGTTTTC
GTTTTCTCTCCCTTTCTCTGCTTGTTCTCTTTCCTTGTTCTCCCCCCCCC
TTTTTTTTTTTCTCTCTCTCCCTCTCTCTCTCCCCTCCTTCCTCCTTTCG
CTCGCCCCCCGCCTTTTTTTTTTTTTTTTCCCCNTCNCCGCCCGCTCCGC
GCTCTCTTTCTTTTTTTCTCTTCTCCTCTTTTGGTGGCGTGCCTCTTTCC
TTCTCGTCTTTTTCTCCCCCCCCTTTCTTTTCTTTCCTTTCCCCTCTTCT
CTTCTTCGCCCCCCTTTCTCTTCTTTTCCCCTTCCCCTTCTTTCTCCTCC
TTTTTCCCTTTCTTTTTTCCTCTCCTCTTTTTTGCTTCCTTTTCTTCTTC
CCCCCCCTCCCCTCTTTCCCTTCTTCCCCCTTTTCTTTCCCCCTTTTCCC
TTTCCTTTCCCCCTTTCCTCTCCCTCTTCCTTTTCTTTTCCTCCTCTTTT
TCTTCCTCTTTTTTTCTCCCTTTTCCCTTCTTCCTCCGTCCTCTTTCTCC
TCTTTTTTCCTCTTCCTCCTTTCTTGTCTTTGCTCCTTCCTCCTTTTTTT
CTCTCCTCCCTTTTTCCTTTTCTTCCCTTTTACTTTACATCTCTGTCTCT
CCCTTACTCTTATTTTCTTCCCTTTCTCTTTTCCTCCCCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_g18.b1 MSMg01no387_g18.b1 CHROMAT_FILE:
MSMg01no387_g18.b1 PHD_FILE: MSMg01no387_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:28 2005
         (377 letters)



>mm_chr14_58279745_58280521
          Length = 777

 Score =  621 bits (321), Expect = 0.0
 Identities = 360/373 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagagattcacctgcctctgcctcccaagtaagtgctgggattaaaggcatgt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaattcacagagatccacctgcctctgcctcccaagtaagtgctgggattaaaggcatgt 422

                                                                       
Query: 65  gccatcacacttggccaccaagaacatttttaaagcaaaaatgaagggtcttcagacttg 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gccaccacacttggccaccaagaacatttttaaagcaaaaatgaagggtcttcagacttg 362

                                                                       
Query: 125 atgtgccacttactaaagtgtgtatagaaactaccataattgaactgttagtgcactgtc 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 361 atgtgccacttactaaagtgtgtatagaaactaccataaatgaactgttagtgcactgtc 302

                                                                       
Query: 185 atagaaaagaatagaaagttgtgccaggcagtggtgacacacacctttagtcccagcact 244
           |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 301 atagaaaagaatagaaagttgtgccaggcagtggtggcacacgcctttagtcccagcact 242

                                                                       
Query: 245 tgggaggcagaggcaggtggatttctgagatggaggccagcctggtctacagagtgagtt 304
           ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 241 tgggaggcagaggcaggtggatttctgagatcgaggccagcctcgtctacagagtaagtt 182

                                                                       
Query: 305 ccaggacagccagggctacacagagaaaccctgtcttgaaaaacctcccaaaagaaaaag 364
           |||||||||||||||||||||||||||||||||||| |||||||| |  |||||||||||
Sbjct: 181 ccaggacagccagggctacacagagaaaccctgtctcgaaaaaccacaaaaaagaaaaag 122

                        
Query: 365 aacaaagaatagg 377
           || ||||||||||
Sbjct: 121 aaaaaagaatagg 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)