BAC Information

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BAC

Clone NameMSMg01-387J24
Chromosome14 (Build37)
Map Location 68,060,457 - 68,230,980
singlet/doubletdoublet
Overlap geneLOC100043046, LOC100043056
Upstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416
Downstream geneCdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387J24.T7 (MSMg01no387_j24.b1)MSMg01-387J24.TJ (MSMg01no387_j24.g1)
ACCAG490314AG490315
length751799
length of high quality
(start - end)		369 (66 - 434)379 (79 - 457)
definitionCHROMAT_FILE: MSMg01no387_j24.b1 PHD_FILE: MSMg01no387_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:44 2005CHROMAT_FILE: MSMg01no387_j24.g1 PHD_FILE: MSMg01no387_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,060,457 - 68,060,825)(68,230,602 - 68,230,980)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGCGG
AATTCAGGCCACCTTGCTCTGCCCACTGGGTTGTATCATTGCCCCACAGA
ATTTTCTGTAATCACTCTCGAACGCCAGCCCATGATTGACTTTTGCTCTT
GGTGCTTTACAAATGGGCTTAACCTAGGTTGAGGCAGGTTGGGGACATGG
CCAAAGCCAAGAGCCAGGTAGTAACAGAGCCAGAACCTAACCCTCCCGCA
AATTCCCCTGATTTCCCACTTGCACCTAAAAATAATATAAGCAAGATGTT
ATACAGTTTTGAATCTTAAAAAACATCTTTTAAAATAAGATTTTTGTTTT
TCTAGATTCAAGTTGGGCCTTGGAAGTGGGGAAAGAATTGAGAGAACTTG
GAAAGATTGAGGAAGGACCTGGCCAAAGGGAGCAATAGCTTGGGAGAGCA
AGAGCAAACTCTCCCCCACAGGGGGAAGGAATTTGTTCCCCGTGTGCATG
GAAACCCCCCAGCGCCCAGAGTTGGAGTCTTACCCCTCTCTGCGTCTTCC
CCCCTCCCCCCTACTTTCCACCTGTGAGACCCCCGCCTCCTACACCCCTC
CCCCCCTTCCCCCCCCCCCCCTTTCCCCAATCTCCCCCAAGGCCCGCTCT
TCCCTTTCCTCCTCTCTCTCCCCCCCCTTTCTCTTTCTTTTTCCCCCCCT
TTCCCTCCCCCACTTTCCCCCTCTTTCCCCCTCCTTTTCCCCCCCTCTTC
T

NNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTCCTTCTGATTTTCCAGC
TTACATGTTGGAAGGTTTCTGGAATTATCCATTAGCATCTGATTTTGTGG
AAGCTGGGGTAGCTGGTGCCATGGCTGACTGAGGTGAGGCTGGAGTCCAG
TGCTACCCAGTAGGTCAGCTCCAAGCCGGCTTGGGTATCACCAGGATGTC
ATCGCTTGTCCTGCTTTTGCTTAAAACAAACCAAACCAAAACCCCTCGCC
TTCCTCACTCTCCAGTCTGAAACAATGAAACTATTGTTGGACATAAAGGT
TTATCCCCACAATGCCTGCACTTGGGAGCTGGAGGCACGAGGATGGCTGT
GAGTCAAACTTGGCTTATGTGCTGAATTCTAGGGCAGCCACAGCTGTACA
GTGAGACCTTGTAAGATCAGAATGAAATTAAATGACATAGCTTAGGGAAG
AAGCAAAGGAGAATAAAATAAAACCTCCCCTGGCTCCTTGGTGTGTAGGC
CCAATTCTACTCTCTTTCCTTCTTTCTCGTCTCCTCTTTCCCTTTTTCCC
TCCCCCCTCTTTTCTCTTCTCTTTTCTTCTTCATCCTTTTTCTTTCCACC
CCTCCCCCTTTTTTCCCTTTTTTCGTTTCTTCCCTTGCTTCTCCTTTCCT
TCCTCGATGTCTCTCCTTTTCTTACTTACTCTTCCCTCCCCATTTTCCTT
CTTTTATCCTCTTTTTCCTTCTTTCTTCCGTTGCTCCCTCTTCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_j24.b1 MSMg01no387_j24.b1 CHROMAT_FILE:
MSMg01no387_j24.b1 PHD_FILE: MSMg01no387_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:44 2005
         (369 letters)



>mm_chr14_68060257_68061025
          Length = 769

 Score =  690 bits (357), Expect = 0.0
 Identities = 366/369 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctctgcccactgggttgtatcattgccccacagaattttctgtaatcactctcgaacgc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 gctctgcccactgggttgtatcattgccccacagaattttctgtaatcactctcgaacac 260

                                                                       
Query: 61  cagcccatgattgacttttgctcttggtgctttacaaatgggcttaacctaggttgaggc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcccatgattggcttttgctcttggtgctttacaaatgggcttaacctaggttgaggc 320

                                                                       
Query: 121 aggttggggacatggccaaagccaagagccaggtagtaacagagccagaacctaaccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggttggggacatggccaaagccaagagccaggtagtaacagagccagaacctaaccctc 380

                                                                       
Query: 181 ccgcaaattcccctgatttcccacttgcacctaaaaataatataagcaagatgttataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgcaaattcccctgatttcccacttgcacctaaaaataatataagcaagatgttataca 440

                                                                       
Query: 241 gttttgaatcttaaaaaacatcttttaaaataagatttttgtttttctagattcaagttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttttgaatcttaaaaaacatcttttaaaataagatttttgtttttctagattcaagttg 500

                                                                       
Query: 301 ggccttggaagtggggaaagaattgagagaacttggaaagattgaggaaggacctggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 ggccttggaagtggggaaagaattgagagaacttggaaagattgaggaaagacctggcca 560

                    
Query: 361 aagggagca 369
           |||||||||
Sbjct: 561 aagggagca 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no387_j24.g1 MSMg01no387_j24.g1 CHROMAT_FILE:
MSMg01no387_j24.g1 PHD_FILE: MSMg01no387_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:44 2005
         (379 letters)



>mm_chr14_68230524_68231302
          Length = 779

 Score =  733 bits (379), Expect = 0.0
 Identities = 379/379 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttccttctgattttccagcttacatgttggaaggtttctggaattatccattagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aggttccttctgattttccagcttacatgttggaaggtttctggaattatccattagcat 398

                                                                       
Query: 61  ctgattttgtggaagctggggtagctggtgccatggctgactgaggtgaggctggagtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctgattttgtggaagctggggtagctggtgccatggctgactgaggtgaggctggagtcc 338

                                                                       
Query: 121 agtgctacccagtaggtcagctccaagccggcttgggtatcaccaggatgtcatcgcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agtgctacccagtaggtcagctccaagccggcttgggtatcaccaggatgtcatcgcttg 278

                                                                       
Query: 181 tcctgcttttgcttaaaacaaaccaaaccaaaacccctcgccttcctcactctccagtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tcctgcttttgcttaaaacaaaccaaaccaaaacccctcgccttcctcactctccagtct 218

                                                                       
Query: 241 gaaacaatgaaactattgttggacataaaggtttatccccacaatgcctgcacttgggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaaacaatgaaactattgttggacataaaggtttatccccacaatgcctgcacttgggag 158

                                                                       
Query: 301 ctggaggcacgaggatggctgtgagtcaaacttggcttatgtgctgaattctagggcagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ctggaggcacgaggatggctgtgagtcaaacttggcttatgtgctgaattctagggcagc 98

                              
Query: 361 cacagctgtacagtgagac 379
           |||||||||||||||||||
Sbjct: 97  cacagctgtacagtgagac 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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