BAC Information

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BAC

Clone NameMSMg01-388E08
Chromosome14 (Build37)
Map Location 111,967,478 - 111,967,824
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388E08.T7 (MSMg01no388_e08.b1)MSMg01-388E08.TJ (MSMg01no388_e08.g1)
ACCAG490806AG490807
length787779
length of high quality
(start - end)
508 (26 - 533)493 (80 - 572)
definitionCHROMAT_FILE: MSMg01no388_e08.b1 PHD_FILE: MSMg01no388_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:34 2005CHROMAT_FILE: MSMg01no388_e08.g1 PHD_FILE: MSMg01no388_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCAGCTCTCT
GCAAGTGTGTAGGGGCCACTACTCTAGCCTCTGATTTTCTGGAGAAGACT
GTTTTAAGGACTTCCTTTTAAGTTTGGTGGACTCCATGATGAGATCAAGC
CTGCCTGTTCATGATGGGTTCTTGTAAGTTTCTACGCTGTGATATTCAAT
TTCTTAGTATTTAACTGAGATTCTTCCACTTGTATCCATCATGGGTATAC
ATTTGTTATTTTCTTCTTGCCCCCTTTTCAATTTTCTCTGAATTTGATCT
TGTTATAGTTTCATAGAATCACATAGAAAGGTTCTCTGTGATATCTTGAA
AGTTAAAATAATCTGAATTAATTCCTCTTAAAATTAAACAACGTGACTGG
TGTCATATCAGAAACTTTCCATTACTGGTCTAGTTCTACCACATACAGAT
TTTAGTTTTATGTTTCAATTTGGCTAGGTTGTGAGTATATAAGAATATGC
TTCTTGGCTTTTACATTTGTTGATTTGCTGATGTATGGGCCATAATATAT
ATATATATATATATATATATATATACACACACACACACACACACACACAC
ATACATACCCATATATTTGCGTGTGTGGATGTATGCATGGATATAATGAA
TATGTGGATAAATATCCCCTTGGATCATCAAAAATCATACATATACCCAC
CCCTCTCCCCGAATTTCATTTTCCACTCCCCCCCGGTCGACCAACCCCGA
AATCACCCTTCTTCTTTCTTTCCACAAACATCTCCTN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAATATGCCCCAACTGGT
AAGAAGGATACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACACCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GTGTGAGGTAACACGTTCACAAAGGAACTCCCACAATATGTACTCTCTGA
TAAGTGGATTATACCCCCAACCCTATTATACCCCAGATATAAGATACCAT
TTTGCTAAACCCCTGAACCTCCAGAACAATGAAAGCTGAAATGGGGGACC
CTAGCCCCCCCCCTTAGAATTGGGAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_e08.b1 MSMg01no388_e08.b1 CHROMAT_FILE:
MSMg01no388_e08.b1 PHD_FILE: MSMg01no388_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:34 2005
         (508 letters)



>mm_chr14_111966919_111967826
          Length = 908

 Score =  663 bits (343), Expect = 0.0
 Identities = 346/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 162 ctgtgatattcaatttcttagtatttaactgagattcttccacttgtatccatcatgggt 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 ctgtgatattcaatttcttagtatttaactgagattcttccacttgtatccatcatgggt 847

                                                                       
Query: 222 atacatttgttattttcttcttgcccccttttcaattttctctgaatttgatcttgttat 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 atacatttgttattttcttcttgcccccttttcaattttctctgaatttgatcttgttat 787

                                                                       
Query: 282 agtttcatagaatcacatagaaaggttctctgtgatatcttgaaagttaaaataatctga 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 agtttcatagaatcacatagaaaggttctctgtgatatcttgaaagttaaaataatctga 727

                                                                       
Query: 342 attaattcctcttaaaattaaacaacgtgactggtgtcatatcagaaactttccattact 401
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 726 attaattcctcttaaaattaaacaatgtgactggtgtcatatcagaaactttccattact 667

                                                                       
Query: 402 ggtctagttctaccacatacagattttagttttatgtttcaatttggctaggttgtgagt 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ggtctagttctaccacatacagattttagttttatgtttcaatttggctaggttgtgagt 607

                                                          
Query: 462 atataagaatatgcttcttggcttttacatttgttgatttgctgatg 508
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atataagaatatgcttcttggcttttacatttgttgatttgctgatg 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)