BAC Information

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BAC

Clone NameMSMg01-388L11
Chromosome14 (Build37)
Map Location 25,372,554 - 25,622,699
singlet/doubletdoublet
Overlap geneLOC669315
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24
Downstream geneLOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388L11.T7 (MSMg01no388_l11.b1)MSMg01-388L11.TJ (MSMg01no388_l11.g1)
ACCAG491144AG491145
length764759
length of high quality
(start - end)
554 (35 - 588)532 (77 - 608)
definitionCHROMAT_FILE: MSMg01no388_l11.b1 PHD_FILE: MSMg01no388_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:06 2005CHROMAT_FILE: MSMg01no388_l11.g1 PHD_FILE: MSMg01no388_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,372,554 - 25,373,104)(25,622,168 - 25,622,699)
sequence
CGGCCGCTAAACGACTACTATTTCCAGAGGATCCGCGGAATTCTTTGTTT
TGTTTCATTACATGTTGAACTTGTTTTGTGTTTCATTTTTCTTGCTCCAT
GAATGAAGTAACTTTTTAATTTTTCTGCTTTTCTCTTTGCTAAATAAACA
TAACTTCTGACAATGATTTCTTTAACCCAGCTTTGATCTGGTTTCTGCAT
TCTCCTGAGCCTATATGGATTTCTTTATATATAAAACCCTGATTTAGTCT
AAGAACCCTGCTGAGTCAGTTTGGCAAGAATCTCTACCCCTTGATGCTTG
ATCACACTCAAACTGGACAAGATTCCTCGTTTCCAACTGTGGTGGATTGA
ATGAGAATGGTCCCCATAAGCTCATATGTTTGAATGCTTGGTCTCCAGTT
AGTGGAACTGTTTGGGAAGGATTAGGAGGTGTGGCCTTGTTGGAAAAGTT
GTGACTTTGGGAGTGAGCTTTGAGGTTTCAAAAGCCCATGTCAGGCTCAT
TGTATCTCCACCTGCTTCCTGCAGGTCAGGATGCAAAGCTCTCAGCTACT
GCTATAGTGCCACACCTATCTACTTCCTTTCATGATTATGGCCCAACCCT
CTAAAACTGTAAGTGAGCCCCCCTATAAATGCTTTCTTTTATAAAGTTGC
CCTGNTCATGGNGTTTCTTCCCAGCATAAACCAGTAGCTAAAAACCACAC
TCGGGACCTGATCACCTTGTTGGCCTTCCCAAAACTCCGTTAGGTGGGGC
AAAAATACCCCCCC
NGGCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGCGGCCCTGGTTGTGGCTCTCC
AGCATTAGTAATAACTGGCTCTGATCCCTGGACGAATGAGTCAGCCTTGC
TGGAGGGTCAGTTATAATCCCACGTACAGTCCATGAACTCCTTCCCAGAA
CCCTGCAAATAGGGCAGTGGGGTCTTCTTCTATAGAGTCAATGCCCAGTA
CATTCAGGGTCCTGACCCTTAGATTCAGGTCTCATTGACTCCTTTTGATT
TGACCCCCACCTCCCCACAAATCTCCCTGCCTCTGAGACCATCTCCTCCA
TAGCTGCTCACATAGTAATGTTCTAATACCAGACCTCCTCATGTCCTGCC
AGCTCAAGTATCCTCTTTGGTTCCCCATTGCCCATCACATTCCCCGCCAT
CTGACTGGTACCTGCTGTTCTCCCTAGAAGCAATCCTTTTCCCTCCAACC
CTCTCTGGAGCTGCTCCTCTGTGTGAACTCTTTCTATAACCTAGACACCC
ACTGTCCACAGCCTGCGCATCTTCAGGGCTGCATGCTTCCTACTGCAGAT
ACATTCAGTCACCTGGTCCAAGCTCTCTCTGAAGACATGGCTCCAACACC
AGTCATTCCTTTTAAGTCTACCCACCACCCTCACCGTNCAAATGCATTTT
CGTCATTCAGTGGGCAGTGGAGCATATTCTAACTTCCAGTTTCCTGGAAC
TACTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_l11.b1 MSMg01no388_l11.b1 CHROMAT_FILE:
MSMg01no388_l11.b1 PHD_FILE: MSMg01no388_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:06 2005
         (554 letters)



>mm_chr14_25372351_25373304
          Length = 954

 Score = 1058 bits (547), Expect = 0.0
 Identities = 550/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctttgttttgtttcattacatgttgaacttgttttgtgtttcatttttcttgctc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttgttttgtttcattacatgttgaacttgttttgtgtttcatttttcttgctc 263

                                                                       
Query: 64  catgaatgaagtaactttttaatttttctgcttttctctttgctaaataaacataacttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catgaatgaagtaactttttaatttttctgcttttctctttgctaaataaacataacttc 323

                                                                       
Query: 124 tgacaatgatttctttaacccagctttgatctggtttctgcattctcctgagcctatatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgacaatgatttctttaacccagctttgatctggtttctgcattctcctgagcctatatg 383

                                                                       
Query: 184 gatttctttatatataaaaccctgatttagtctaagaaccctgctgagtcagtttggcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatttctttatatataaaaccctgatttagtctaagaaccctgctgagtcagtttggcaa 443

                                                                       
Query: 244 gaatctctaccccttgatgcttgatcacactcaaactggacaagattcctcgtttccaac 303
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 gaatctctaccccttgatgcttgatcacactcaaactggacaagattccttgtttccaac 503

                                                                       
Query: 304 tgtggtggattgaatgagaatggtccccataagctcatatgtttgaatgcttggtctcca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtggtggattgaatgagaatggtccccataagctcatatgtttgaatgcttggtctcca 563

                                                                       
Query: 364 gttagtggaactgtttgggaaggattaggaggtgtggccttgttggaaaagttgtgactt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttagtggaactgtttgggaaggattaggaggtgtggccttgttggaaaagttgtgactt 623

                                                                       
Query: 424 tgggagtgagctttgaggtttcaaaagcccatgtcaggctcattgtatctccacctgctt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgggagtgagctttgaggtttcaaaagcccatgtcaggctcattgtatctccacctgctt 683

                                                                       
Query: 484 cctgcaggtcaggatgcaaagctctcagctactgctatagtgccacacctatctacttcc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctgcaggtcaggatgcaaagctctcagctactgctatagtgccacacctatctacttcc 743

                      
Query: 544 tttcatgatta 554
           |||||||||||
Sbjct: 744 tttcatgatta 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no388_l11.g1 MSMg01no388_l11.g1 CHROMAT_FILE:
MSMg01no388_l11.g1 PHD_FILE: MSMg01no388_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:06 2005
         (532 letters)



>mm_chr14_25621968_25622899
          Length = 932

 Score =  951 bits (492), Expect = 0.0
 Identities = 522/532 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcggccctggttgtggctctccagcattagtaataactggctctgatccctggacgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctgcggccctggttgtggctctccagcattagtaataactggctctgatccctggacgaa 673

                                                                       
Query: 61  tgagtcagccttgctggagggtcagttataatcccacgtacagtccatgaactccttccc 120
            ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 672 cgagtcagccttgctggagggtcagttatagtcccatgtacaatccatgaactccttccc 613

                                                                       
Query: 121 agaaccctgcaaatagggcagtggggtcttcttctatagagtcaatgcccagtacattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agaaccctgcaaatagggcagtggggtcttcttctatagagtcaatgcccagtacattca 553

                                                                       
Query: 181 gggtcctgacccttagattcaggtctcattgactccttttgatttgacccccacctcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gggtcctgacccttagattcaggtctcattgactccttttgatttgacccccacctcccc 493

                                                                       
Query: 241 acaaatctccctgcctctgagaccatctcctccatagctgctcacatagtaatgttctaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 492 acaaatctccctgcctctgagaccatctcctccatagctgctcacatagtaatattctaa 433

                                                                       
Query: 301 taccagacctcctcatgtcctgccagctcaagtatcctctttggttccccattgcccatc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 432 taccagacctcctcatgtcctgccagctcaagtatcctctctggttccccattgcccatc 373

                                                                       
Query: 361 acattccccgccatctgactggtacctgctgttctccctagaagcaatccttttccctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 372 acattccccgccatctgactggtacctgctgttctccctagaagcaatcctcttctctcc 313

                                                                       
Query: 421 aaccctctctggagctgctcctctgtgtgaactctttctataacctagacacccactgtc 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 312 aaccctctctggagctgctcctctgtctgaactctttctataacctagacacccactgtc 253

                                                               
Query: 481 cacagcctgcgcatcttcagggctgcatgcttcctactgcagatacattcag 532
           |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 252 cacagcctgcgcatcttcagggctgcgtgcttcctactgcagatacattcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)