BAC Information

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BAC

Clone NameMSMg01-390F14
Chromosome14 (Build37)
Map Location 101,430,250 - 101,430,415
singlet/doubletsinglet
Overlap genenone
Upstream geneKlf12, LOC100043413, EG668683, EG668684
Downstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390F14.T7 (MSMg01no390_f14.b1)MSMg01-390F14.TJ (MSMg01no390_f14.g1)
ACCAG492382AG492383
length740741
length of high quality
(start - end)
489 (130 - 618)581 (82 - 662)
definitionCHROMAT_FILE: MSMg01no390_f14.b1 PHD_FILE: MSMg01no390_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:14 2005CHROMAT_FILE: MSMg01no390_f14.g1 PHD_FILE: MSMg01no390_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTGTTCATTATAGTCTGAATAGACAACAAAAAGTGGCAA
AGAATCTTAGACTAGATAGTTCATGGGCCTAGGGGAAAAGTTACTACTAT
AATTCAACTGAATGAGCATAGAAATAAAATGGCTCCCAATGACATATTGC
AATATCCACAGATCGGTGCATTGCTCAACGATTATCAAAGCAGTGTCTTG
CACTAGGTGGCAATAAACAGGGACCTACAATGGAAAATGCTCAGAGAACG
TGAGAGTTCGGAGCACTTGGTCCTACGTGGGACATCAGCATAAATCCCCT
CCCCTTAAGGTTCAGTGATCCGTGCACCAGAGGTGTTGGGAAGAGTGTGA
GATCCAGGGGTGATGAATAACTCCCAGGAAACAGCGTCTTCCAGACACAA
CATAGTTGATGCACATGGGAACTCACACAGATGATTGACAGCTCGCACAA
CCTCTGCTCAGGTTCGAAGACAGCAAAAGCCCAGCACTGAGCAGGGGAAG
TGCACACAAAGTCCCACCCCTCAACAAGAAGCTATTTGCAATTGACACCT
GCTAGGAGGGGAATACCAGTTTTCGCCTCAACAGACTCTCACTGTGTACA
CCAGCAACACTCCTGGGCAGGCCACATGTCCAGGAGTATTTGACCAATAC
ATGACAGACCCCATGTTTTTGCTGTGGGGTTTTTGTTTCC
NNNNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAATCCCAAGAAATTAAA
ACCTATAATTCCATGGTACATAGGTGATTTATTGCCCCACATTATTCTAA
TTAAATTTTATTCATGATTTTTGAGTTAAGAGTCCTGATCACATATGGTG
TTTACAAGGGTTTGTTTATTTGGAGATGTTTTTTATAAAGAAAATATCAA
CTATTATCAGTTGGTGACATTGCAACTGATACCAGGAGAAACACAGGTAA
CAGATCTAAGACAACACCTGATTTATCTTTATGAGGCTCTGGGAATAATT
AAATATAGAAATTAATAAAAAGCAACACCTAAAGTGACTCCTGACCCTAG
ATTCTGTCAGTGCCAAAACTTTTGTGTCATTTGTTTAGAGAGGGAATCCA
GTTGAAAAACAAATTTTAGGTGGGTGAAATTACTGGAACATTCTTAGAAC
ACATGGAACTCAAATTTCCTGTTAGAAATCTAAGTAATATTTCCAAGAAG
TGGCTAGACTACTGTTCTTGAGCTCAAGGCAGAATTTTTGGCTAATAAGA
AAGCATGTAAGTGGGGTTTGAAACCATAAATATCATTGGATTAACCTCAT
GAGGGTGCAGAATAAATAGAGAGATGATGTTGTCAACATAGAAAATATCA
ATACTTAGGTGATGGGTAGGAAAAAGAAGTCCACAAAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_f14.g1 MSMg01no390_f14.g1 CHROMAT_FILE:
MSMg01no390_f14.g1 PHD_FILE: MSMg01no390_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:14 2005
         (581 letters)



>mm_chr14_101430050_101431030
          Length = 981

 Score =  306 bits (158), Expect = 4e-87
 Identities = 164/166 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaatcccaagaaattaaaacctataattccatggtacataggtgatttattgccccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaatcccaagaaattaaaacctataattccatggtacataggtgatttattgccccaca 260

                                                                       
Query: 61  ttattctaattaaattttattcatgatttttgagttaagagtcctgatcacatatggtgt 120
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ttattctaattaaattatattcatgatttttgagttaagagtcctgatcacatatggtat 320

                                                         
Query: 121 ttacaagggtttgtttatttggagatgttttttataaagaaaatat 166
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacaagggtttgtttatttggagatgttttttataaagaaaatat 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)