BAC Information

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BAC

Clone NameMSMg01-391A16
Chromosome14 (Build37)
Map Location 111,526,052 - 111,526,386
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391A16.T7 (MSMg01no391_a16.b1)MSMg01-391A16.TJ (MSMg01no391_a16.g1)
ACCAG492910AG492911
length761747
length of high quality
(start - end)
413 (63 - 475)445 (81 - 525)
definitionCHROMAT_FILE: MSMg01no391_a16.b1 PHD_FILE: MSMg01no391_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:08 2005CHROMAT_FILE: MSMg01no391_a16.g1 PHD_FILE: MSMg01no391_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGGACCGCGNGAATCTGGA
ACATTCCCTGGGAATTGTTAATCTACTCATTGTTTCTCCATTGGCAAAAA
CTGACTTTCCCTCTCCCAGCAGATATAAGTGAAAGTTTAGTTATGAATAT
TAGTTCATTAGTGGCTAGCTTTTCATTCACATATTCATTCATTCATTGTT
AAAGAAAATATAACACAATAAAATATAACAAGATGAATCAAAATTATCAC
ATTAAAGTTGGACAAGGTAAACAAGCAGAAGATATCAAGCTAGGTCAGAA
GAATCAGAGACTCGCTTCTTCAGACACTCAGTGACTTCATAAAAACGCTC
AATAGAAAGCTATAATATAAATGCAGAGGACAAGGTGCAGACCCACGTAA
GCACTGTGCATGCTGCTTCTGTCTGTGAATTTACTTGAGCTTTGTCCATG
TTGATTTAAAAGGGGTTTTTGTCTTCCCATCTAGNTCTTCCAGNTTTTCT
GCTTCCTTTTCTGCCGGTTTTCCTGAGCTCAGAAAGGAGACATCAGATGA
TGGAGATATTCCCTTAGGGTTGCGCGGTCCAAGACCCCTGGTCCCTGAAA
ATACAAAACAAGGGGGCCCGAACTTCCTTCCCCCGGTGCCGGCGAAAACT
TTGACGTGTACCAAAAAACAAACCCCTTCCTTGAGAAAACCGAAATTTTT
TGGCCTACTTTCCCCCCCCTAAAAAAATTCCCCTCTTAAACCCCCCAGAA
ATGGCTTCCCC
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCC
ATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCT
TTATATATGTTGGATATTAGTCCCCTATCTGATTTGGGATAGGTAAAGAT
CCTATCCCAGTCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTG
CCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGAT
CTTACAGCACAAGCCATTGTTTTTCTGTTCAGGAATTATTCCCCTGTCAC
CTTATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCT
CTGGTTTTAAGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAA
GGAGATAAGTATGGATCGATGCGCATTCTTCTACATGATAACAACCAGTT
GTGCCAGCACCAATTGTTCAAAATGCTGTCTTTCTTCCACTGGATGGTTT
TAGCTCCCTTGTCGAAAATCACGTGACCATAGGTGTGCGGTCTCATTCCT
GGGCCCTCCACTTATTCCATTGGGCTACTGGTCCGGCCCCCTATACTTTT
TTTTTGCTGTTCCCCCCCACACTTTTTTGCTCTTCCGCTTTTTCCCTCCC
TTGCCTCCTCTCCCTTACTTCCTTCTCCCCATCCCCGTTTCTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_a16.b1 MSMg01no391_a16.b1 CHROMAT_FILE:
MSMg01no391_a16.b1 PHD_FILE: MSMg01no391_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:08 2005
         (413 letters)



>mm_chr14_111526052_111526864
          Length = 813

 Score =  495 bits (256), Expect = e-144
 Identities = 309/336 (91%), Gaps = 17/336 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattgttaatctactcattgtttctccattggcaaaaactgactttccctctcccagcag 60
           |||||||||||||| || ||||||| ||||||  |||||||||||||| |||||||||||
Sbjct: 335 aattgttaatctacccagtgtttcttcattggtgaaaactgactttccatctcccagcag 276

                                                                       
Query: 61  atataagtgaaagtttagttatgaatattagttcattagtggctagcttttcattcacat 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atgtaagtgaaagtttagttatgaatattagttcattagtggctagcttttcattcacat 216

                                                                       
Query: 121 attcattcattcat---------------tgttaaagaaaatataacacaataaaatata 165
           ||||||||||||||               | ||||||||||| |||||||||||||||||
Sbjct: 215 attcattcattcattcattcattcattcattttaaagaaaatgtaacacaataaaatata 156

                                                                       
Query: 166 acaagatgaatcaaaattatcacattaaagttggacaaggtaaacaagcagaagatatca 225
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acaagatgaatcaaaactatcacattaaagttggacaaggtaaacaagcagaagatatca 96

                                                                       
Query: 226 agctaggtcagaagaatcagagactcgcttc-ttcagacactcagtgacttcataaaaac 284
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 95  agctaggtcagaagaatcagagactcgc-tctttcagacactcagtgacttcataaaaac 37

                                               
Query: 285 gctcaatagaaagctataatataaatgcagaggaca 320
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  gctcaatagaaagctataatataaatgcagaggaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)