BAC Information

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BAC

Clone NameMSMg01-392H03
Chromosome14 (Build37)
Map Location 99,920,345 - 99,920,755
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
Downstream geneLOC668672, EG546623, Klf12, LOC100043413, EG668683
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392H03.T7 (MSMg01no392_h03.b1)MSMg01-392H03.TJ (MSMg01no392_h03.g1)
ACCAG493978AG493979
length786777
length of high quality
(start - end)
514 (46 - 559)248 (73 - 320)
definitionCHROMAT_FILE: MSMg01no392_h03.b1 PHD_FILE: MSMg01no392_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:58 2005CHROMAT_FILE: MSMg01no392_h03.g1 PHD_FILE: MSMg01no392_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTACTATGCCTGTTTCTCATATATAGACATTCTTTTATGCCCAGT
TTTAATATTTTTACTTTAAAAATTTTGATGCCAAGCTGAGGATATGGCTC
AATAATAAAACACCAAGGTAGCATGTACATGAAGCCCCCAGATGCACACA
CTTAACAAAAAAAGTATGGGATGGGATAGCCTAGAATAGAAGAGAGGAAT
GGACTAGAATGGAATGGACTAGGATAGAATAGAATAGAATAGAATAGAAT
AGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAAT
AGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAAT
AGAATAGAATAGAATAGAATAGAATAGAATAGAATGAAAAGATAGGAAGG
ACAGTAAAGCTTTGCCCAGGAATGACAAGGGCATGCTGTAATCCCAGCAC
GTGGAAGGCCATAGGCAGGATAATAAGTAACCCTTAATGTGAAGCTAGCC
TTCTCTACAGGGCAAGCTTTAGACTAATTGGAGATTTATAGTAAGACTCT
GGTTTCCAGCGAATGAAAGTATAAAAAACCACGCCAGCTTGGCACGGAGG
AGGAACAAATAATTGCCCCCACCATGGTTTTCCTCCCCCCCCCCCCAACG
ATTGCGACCCCCCTCTAGCTCCTGGCCCGGCCCTGCCCCCCATCAACTCT
GGGCCCCCGCACCCATAATATCCCCCCCCGCCCGCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATCAGGTAGACAAGGATGACTTTGAACT
CTTGATTCCCTTACCTCCTGAGTGCTGGGGTTACAGACATGGAGCACTAC
CATGTTTTAGTGAAGATGAGAAAATCAAATCTGGGTTCTTTTTAAGCTAG
ATATCGAGCTACATCTGTAGTCTAAAACACCGTTGTTTTCGAAGCAGGGT
TTCCTGTAGTCCCAGCTGGCCTTAAACTCACTACGGGGCAGAGGCTGCTC
TCTATCTCCTGATCCCCCTGTTCTTTTCCTCCCAGGTGCTGGAATTACAG
GCTTGCACTCCCATAGCCATTCTGGAACATTTTATGTATGGAATTTAAAA
AATTAAGGCAGGAATTCAGACTTATTGTCTGATTTACATTCTGTCACTAA
GAGTGGACTGCGCGCTCCTTGGATGGNAGTCTTCCTTCTTCATCTTTCTG
CCTTGTTGCGTACCCGCCATCATCCGTGCTTGCTTTTTCCCTTTTTTCCA
TACCCGTTAGGCGGTTTGCATTTTTCTTTGCCCTCATTTTTTTATCTCCC
TATGTTTTTTTTTCACCTCGTGCTACCTCTTCCCACCCCTTTTCCTTCGA
TAACGCTCCATATTTTCTCTCTTTCTTCCTCCGCTATTATTCCCCTCCCC
CCCCTCTAACTCCTTTTCTCTCCCTTTTTACTATCCCTCCCCCCCTCCCC
TCCTTCTCCTCCCTTTTTTTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_h03.b1 MSMg01no392_h03.b1 CHROMAT_FILE:
MSMg01no392_h03.b1 PHD_FILE: MSMg01no392_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:58 2005
         (514 letters)



>mm_chr14_99920344_99921257
          Length = 914

 Score =  625 bits (323), Expect = 0.0
 Identities = 409/487 (83%), Gaps = 76/487 (15%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttactatgcctgtttctcatatatagacattcttttatgcccagttttaatatt 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaattcttactatgtttgtttctcatatatagacattcttttatgcccagttttaatatt 353

                                                                       
Query: 65  tttactttaaaaattttgatgccaagctgaggatatggctcaataataaaacaccaaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tttactttaaaaattttgatgccaagctgaggatatggctcaataataaaacaccaaggt 293

                                                                       
Query: 125 agcatgtacatgaagcccccagatgcacacacttaacaaaaaaagtatgggatgggatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agcatgtacatgaagcccccagatgcacacacttaacaaaaaaagtatgggatgggatag 233

                                                                       
Query: 185 cctagaatagaagagaggaatggactagaatggaatggactaggatagaatagaatagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||                
Sbjct: 232 cctagaatagaagagaggaatggactagaatggaatggactagg---------------- 189

                                                                       
Query: 245 tagaatagaatagaatagaatagaatagaatagaatagaatagaatagaatagaatagaa 304
                                                                      |
Sbjct: 188 -----------------------------------------------------------a 188

                                                                       
Query: 305 tagaatagaatagaatagaatagaatagaatagaatagaatagaatagaatagaatagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tagaatagaatagaatagaatagaatagaatagaatagaatagaatagaatagaatagaa 128

                                                                       
Query: 365 tagaatagaatagaatagaatagaatgaaaagataggaaggacagtaaagctttgcccag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tagaatagaatagaatagaatagaatgaaaagataggaaggacagtaaagctttgcccag 68

                                                                       
Query: 425 gaatgacaagggcatgctgtaatcccagcacgtggaaggccataggcaggataataagta 484
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 67  gaatgacaagggcatgctgtaatcccagcacgtggaagg-cataggcaggataataagta 9

                  
Query: 485 accctta 491
           |||||||
Sbjct: 8   accctta 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 141
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)