BAC Information

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BAC

Clone NameMSMg01-392O10
Chromosome14 (Build37)
Map Location 123,191,310 - 123,349,857
singlet/doubletdoublet
Overlap genePcca, BC006662, 4930594M22Rik, Tmtc4
Upstream geneLOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847
Downstream geneVgcnl1, Itgbl1, LOC668700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392O10.T7 (MSMg01no392_o10.b1)MSMg01-392O10.TJ (MSMg01no392_o10.g1)
ACCAG494327AG494328
length779766
length of high quality
(start - end)
242 (79 - 320)245 (74 - 318)
definitionCHROMAT_FILE: MSMg01no392_o10.b1 PHD_FILE: MSMg01no392_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:35 2005CHROMAT_FILE: MSMg01no392_o10.g1 PHD_FILE: MSMg01no392_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,349,618 - 123,349,857)(123,191,310 - 123,191,554)
sequence
NGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACACAGGATC
CGCGGAATTCCAGTTTTCGGAGCTGGCAAGATGGAACATATAACATGACC
TATGTGTTTGTTACTCACCAGCAGGTAACAAGGAGGGAACACATTCTTCC
ACCTTCTGGGTATTGCTGAGTATCTTTCTGGGAGCTGTGGCCATGCTGTG
CAAAGAGCAAGGAATCACTGTGCTGGTAAGACCTCCAACACAGATAGGGC
CTGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAA
GCAAGTTGGGGAGGAAAGTATTATTCTACTTACATTTCCACATTGCTGTT
CATCACTAAAGGAAGTCGGGACTGGAACTCAAGCAGGTCAGGAAGCAGGA
GCTGATGCAGAGGCCCCCCCCCCATGCTACTTACTGGCTTGCTTCCCTCT
GGCTTCCTCAGACTGCTCTCTTATACAGCCTAGGACTACCAGCTGCTATC
CCCTACCATGGGTCCTCCCCCCCTTGATTACAAACCAAGAAAATGCCTCC
CACACACGACCTGCACGCCATTCCGCTTCCATACCCCCCTCTGCTCTCTG
TGCGCCCCTTTCCATCTTTGTATTTCCCCCCCCTCTAAGGCCCCCGCCTC
CCTTTTTCCTTTTCTTTTTCTTTCCCCCACTGTGTTGTGCTCCTTTCTCC
CCCTCACCCCCCCATTCCCCGATGTATCCCTCCCCCTGACCCCTCTCTTT
CTCCTTACCCCCCCTCTTCTCCCCCTTTT
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTATCCCATTTTTA
AATAGGGTTATTTGTTTCTCTGGAGTCTAACTTCTTGAGTTCTTTGTATA
TATTGGATATTAGCCCACTATCAGATTTAGGATTTTTAAAGATCTTTGAC
TTTCTCTGGCACATGCCCCAGGAAGTTAGTATTGTAATTTGAGAAGTTCA
TCTCCCAACCCCAATGGCTTCCTATTAGCAGTTACCTTGAACACAAGAGT
TGATAGCATGTTCTTTGTTACTCTTGACCTCTATTTAAAGTAGAAACCCA
TGGAGCTAATTCTCCATGGGCACTTCATACTGAGGTCAGAGGCTCCTGGA
AAACCAAACACTCCACCCCACCACAGGAAAATATGGCTCTTACATATGAA
TAGGAATCTTCAATCTCTCATAGCATCCCATGCTGCTTTTTAAACCCTAT
TTCTATGTACAAAACCTACGAATCCCCTCTGCTCCATGTTCCATCTCATC
CCTGTTCTTATTACCAGACTGTGTATCCCAGTACTTCTTACCCTGCTTAC
CCCCCTCCGCCTTTCGCTGATTCCTTTCTAATTCTTGTGTCGTCCCCCGC
CATTCTTTTCCCCTTCTTCCCCCCCTTTCTCCCTCTTTCCTCCTCTCTTC
TCCCCTCCTCTTCTTTTCCCTTCCTTCCCCCCTCTCTCCTTTTCTCCTCT
TTCCTCCATCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_o10.b1 MSMg01no392_o10.b1 CHROMAT_FILE:
MSMg01no392_o10.b1 PHD_FILE: MSMg01no392_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:35 2005
         (242 letters)



>mm_chr14_123349483_123350124
          Length = 642

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatggaacatataacatgacctatgtgtttgttactcaccagcaggtaacaaggaggga 60
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 375 agatggaacatataacatgatctatgtgtttgttacttaccagcaggtaacaaggaggga 316

                                                                       
Query: 61  acacattcttccaccttctgggtattgctgagtatctttctgggagctgtggccatgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 acacattcttccaccttctgggtattgctgagtatctttctgggagctgtggccatgctg 256

                                                                       
Query: 121 tgcaaagagcaaggaatcactgtgctggtaagacctccaacacagatagggcctgtgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgcaaagagcaaggaatcactgtgctggtaagacctccaacacagatagggcctgtgtct 196

                                                                       
Query: 181 tagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagttggggaggaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagttggggaggaaag 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no392_o10.g1 MSMg01no392_o10.g1 CHROMAT_FILE:
MSMg01no392_o10.g1 PHD_FILE: MSMg01no392_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:36 2005
         (245 letters)



>mm_chr14_123191110_123191754
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgtatcccatttttaaatagggttatttgtttctctggagtctaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgtatcccatttttaaatagggttatttgtttctctggagtctaactt 260

                                                                       
Query: 61  cttgagttctttgtatatattggatattagcccactatcagatttaggatttttaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttgtatatattggatattagcccactatcagatttaggatttttaaagat 320

                                                                       
Query: 121 ctttgactttctctggcacatgccccaggaagttagtattgtaatttgagaagttcatct 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 321 ctttgactttctctagcacatgccccaggaagttagtattgtaatttgagaagctcatcc 380

                                                                       
Query: 181 cccaaccccaatggcttcctattagcagttaccttgaacacaagagttgatagcatgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaaccccaatggcttcctattagcagttaccttgaacacaagagttgatagcatgttc 440

                
Query: 241 tttgt 245
           |||||
Sbjct: 441 tttgt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)