BAC Information

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BAC

Clone NameMSMg01-392O21
Chromosome14 (Build37)
Map Location 36,169,632 - 36,169,970
singlet/doubletsinglet
Overlap geneGrid1
Upstream geneSncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392O21.T7 (MSMg01no392_o21.b1)MSMg01-392O21.TJ (MSMg01no392_o21.g1)
ACCAG494349AG494350
length790823
length of high quality
(start - end)
339 (75 - 413)243 (74 - 316)
definitionCHROMAT_FILE: MSMg01no392_o21.b1 PHD_FILE: MSMg01no392_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:38 2005CHROMAT_FILE: MSMg01no392_o21.g1 PHD_FILE: MSMg01no392_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAACTTTACCACACACACAAAATTAAACTGATTTCTTTACTGCAG
GGTTTTAATGCGCTAATGTGTGTTGTGAATCATGCTAAGACAGATTTAAC
ATAGGGCACTTCCCAGTCTGAGCTCTCCCCAGGGCCCTTCCTCCGGGAAG
CATCTCTAGGAAGAAGTGCTGCTCAGAGCGCACTTTTGGAAAAGCCAAAT
TAATCTCTCTGTCAGAACAGGTGTTACCGTGGATTGGTTTTGCCCAGATG
AGGGCTGTAGATTTTCCCCTGCTGAGGTTATTTGGTTAGCCTCCACACAG
CCTGCCATAATGATTTAAATATCAACTTTGTCACCCATCATCGTAGCTTC
TTAATATGATCAGCAACCTAATCATTTATATGATTTACAACATCACAAGA
AGAAAGCAAGCACAACTACTCCTTTCCCTGGTATTCAAGTACAGAGACTC
AGTGCTGATAGAGGAAACATGCCTGCCCGGGAATGTTTCCGGATCCCCAG
CCCAAAGGAGACCGTATGACTTTCTTCCCCTATGTCTGACACATCCCGAA
TGAACGTTTGGGACTCCCACCAAAAAATTTGTGGAAAGGGGGGGCCCCCC
CAAAAAACTATCCCCCCCAAGGGAGCCAGTTTCCTGAAAGCCCCCCTTTT
TCCGATATATTAACCCCATGGCCCCCCCGATTGGGGGGTTCAATTTGTTC
CTGTTTTTCCCCTAATTTTCCCTCTACCCCCCCTCGGAAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTTTACATCAATCACACATTTTTT
TTATTTAAATTGAGTCATTTGTTTCCTTGACTCTGTTTTCTCAGTTCTTT
ATATTCTGAATTTTAATCCTCTGTTGGATAGATAGCTGGTAAAATTTCTC
TCCCATTCTTTGTTTGTTTTTTTTTTTCCTTCACTTGATTGCTTGTTTCC
TTAGCTGCACAGAAGCTTTTTAGTTTTATGAGGTCCCAGATTTTGATTGT
TGGCCTTAATTCCTTGTTTTATGGAATCCCTTTCAGAAAATTCTTTCCTT
TGCCTGTTTTGTTTAGGGCAATGCTTATGGTTTTTTTTCTTCTAGAACCA
TCTTCACCGTCTCACCTTTTCCATCCCTCTCTCCTCGATTACCCTTCCTC
TCCATCTCTTTCTCCTTTCCCCTCTTTTTCGGACCCTTACCCCTTTTCTC
CTTTTCACTATTTCGCTCCCCCCGTTTTTCCCAGTATTCCATTCCTTTTA
ACAAACTTCTTTTTCCTCTTCCCTTCCCCGTTCTTTTTTCTTTTCCTCCT
CCCCCCTTCTTCCTTTGTCTTCCCTCCTCTTTTTCCTTTCCTTCCTCTTC
CTCTTCCCCCCCCCCTCCTCCTTTTTTTCCCTCTCTCTTTTTTATTTGTT
CTCCTTTCTATCCTCTCTTCCTTCTTTCCCTTCTTCCCATTCTCTCTCTA
TCCCTTCCTCTTTCACCTTTTATCTCCTCCCTCCTCTCCTCCTTTTCTCC
CCACCCTTTTTCCCACCTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_o21.b1 MSMg01no392_o21.b1 CHROMAT_FILE:
MSMg01no392_o21.b1 PHD_FILE: MSMg01no392_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:38 2005
         (339 letters)



>mm_chr14_36169375_36170113
          Length = 739

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattaaactgatttctttactgcagggttttaatgcgctaatgtgtgttgtgaatcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aaattaaactgatttctttactgcagggttttaatgcgctaatgtgtgttgtgaatcatg 537

                                                                       
Query: 61  ctaagacagatttaacatagggcacttcccagtctgagctctccccagggcccttcctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctaagacagatttaacatagggcacttcccagtctgagctctccccagggcccttcctcc 477

                                                                       
Query: 121 gggaagcatctctaggaagaagtgctgctcagagcgcacttttggaaaagccaaattaat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 476 gggaagcatctctaggaagaagtgctgctcagagcgcacttttggaaaagtcaaattaat 417

                                                                       
Query: 181 ctctctgtcagaacaggtgttaccgtggattggttttgcccagatgagggctgtagattt 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 416 ctctctgtcagaacaggtgttaccgaggattggttttgcccagatgagggctgtagattt 357

                                                                       
Query: 241 tcccctgctgaggttatttggttagcctccacacagcctgccataatgatttaaatatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tcccctgctgaggttatttggttagcctccacacagcctgccataatgatttaaatatca 297

                                                  
Query: 301 actttgtcacccatcatcgtagcttcttaatatgatcag 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 296 actttgtcacccatcatcgtagcttcttaatatgatcag 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)