BAC Information

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BAC

Clone NameMSMg01-393B05
Chromosome14 (Build37)
Map Location 68,150,806 - 68,389,969
singlet/doubletdoublet
Overlap geneLOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5
Upstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393B05.T7 (MSMg01no393_b05.b1)MSMg01-393B05.TJ (MSMg01no393_b05.g1)
ACCAG494460AG494461
length768764
length of high quality
(start - end)		562 (33 - 594)558 (63 - 620)
definitionCHROMAT_FILE: MSMg01no393_b05.b1 PHD_FILE: MSMg01no393_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:51 2005CHROMAT_FILE: MSMg01no393_b05.g1 PHD_FILE: MSMg01no393_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,389,495 - 68,389,969)(68,150,806 - 68,151,363)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACCTCAT
GATACGGCACATGGGAGCACATTTCAGTGCAGTGCTGGCACCAGTTGAAG
GGAGATGGGAAGCGGGAGCAGGGACCTCGAAGCCTGTGGCACCTGCAGGG
CCAACCTTTTCCTTAGTAAGCCTTCAGACCTGCAGTGCTTCACGGTAAAA
CCTGTGATGAGCTTGCCGCCCAGCTACAAGGACAAACCGGTTCCAGAGCA
GATCTTGAAGTAAGTGGTTATTAAAAAGGAAACAGTCAGGTGGGAATTGT
AGCAGTGGAGGGAAGGGGAGGCAAGTTCAAGGCCAGTCTGGGCTACAAAA
CAAGACTTTATTTGAAATGTGTCAAAAGCAAAGCCTTTTTCATTTGTTAT
ACTTTGGAAGACCTAATACTTACTGTTTTGCATAAGAGATTAAACCTTAC
CAAGTTAAAGCAACGTGGATTTTATCATTGAATCAGAGGGAAAGGTAAAC
TTCACTTGGGCACAGGATCCTCTAGCCTAAATATCCACTCAGGTATCACT
GAGGGTTTGAGGTTGTTTTCCTATCCCTGGAGAAGCCACCATGCCAGAGA
GATTGATTAACAGTGTTATAGCAAAGCTAGGCAAAGGAGACCACAAACAT
GGTGGGTATGTGTACCTTTTCAAACTGGAGCATAAACTCTTCAGTACAAA
AAAAAAGATGTGGAATGAAAACCCAGTATATATTGTCCCCCGAGTCCATG
GGGACCCTGTCGGCCCAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXATTAGACTTTTCAAAAAGAGCAAGGAGGTACACTGTGG
TGTTTTATTACAGTTTCCTAAGTGGTAATAGAAAAAGAATCACTTGATTT
TAAATTCTTTTCCCCGAGGTATATAAGAAACAAGCAAGATAGAGACTCCC
TATCCCACTCTATCACTGCAAAATAATTTGTTGTTCTTGTTCAAGAATCT
GTGTACTTAGAGACCCCCAGACTTGCTCTGGGAAGTTGAAAGGGAGAAGA
AATTGTAGGGTGGAGAGTCCCAGCTGTACCATAATTGAGAAATTTGGACG
GATCATCCTCAGACAGTGCTGTGCTTCTACACTACTGTAGATCAGAAGGT
CGAATCACACAGGAGGAAGACACTGAACTTGACCTTGGGACAACCTTCTG
GGTAACCTACCACCTCCCTGAATAAGAAGCTTGGTCTTGGAAATGTGTGA
TGATAATCCTGATTGCCAATTTGATTGGACTAGAGTCAATGTGGCTTGTT
AGGCAGACTTCTGGGAGTACTTTCTGGGATGACTGGCATATGGAATAGCG
TCTAAAGTGGAGAGACATGAATGTGGGCATGGGGGAACCAAGGGAGCAAA
TACAGGGGTAGGAAGAAACTCACTAGCTTCAGGTTGCCCTATGTGTCCCT
CTGCTTCCTGGCTGCACAAGGTGGGTAAAATGATCCACTCCCGGGTCCCC
TTTAAGGAGTCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_b05.b1 MSMg01no393_b05.b1 CHROMAT_FILE:
MSMg01no393_b05.b1 PHD_FILE: MSMg01no393_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:51 2005
         (562 letters)



>mm_chr14_68389495_68390456
          Length = 962

 Score =  872 bits (451), Expect = 0.0
 Identities = 469/475 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacctcatgatacggcacatgggagcacatttcagtgcagtgctggcaccagt 63
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggaattccacctcatgacagggcacatgggagcacatttcagtgcagtgctggcaccagt 416

                                                                       
Query: 64  tgaagggagatgggaagcgggagcagggacctcgaagcctgtggcacctgcagggccaac 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgaagggagatgggaagtgggagcagggacctcgaagcctgtggcacctgcagggccaac 356

                                                                       
Query: 124 cttttccttagtaagccttcagacctgcagtgcttcacggtaaaacctgtgatgagcttg 183
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cttttccttaataagccttcagacctgcagtgcttcacggtaaaacctgtgatgagcttg 296

                                                                       
Query: 184 ccgcccagctacaaggacaaaccggttccagagcagatcttgaagtaagtggttattaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ccgcccagctacaaggacaaaccggttccagagcagatcttgaagtaagtggttattaaa 236

                                                                       
Query: 244 aaggaaacagtcaggtgggaattgtagcagtggagggaaggggaggcaagttcaaggcca 303
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 235 aaggaaacagtcaggtgggaattgtagcagtggagggaagggaaggcaagttcaaggcca 176

                                                                       
Query: 304 gtctgggctacaaaacaagactttatttgaaatgtgtcaaaagcaaagcctttttcattt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gtctgggctacaaaacaagactttatttgaaatgtgtcaaaagcaaagcctttttcattt 116

                                                                       
Query: 364 gttatactttggaagacctaatacttactgttttgcataagagattaaaccttaccaagt 423
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gttatactttggaagacctcatacttactgttttgcataagagattaaaccttaccaagt 56

                                                                  
Query: 424 taaagcaacgtggattttatcattgaatcagagggaaaggtaaacttcacttggg 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  taaagcaacgtggattttatcattgaatcagagggaaaggtaaacttcacttggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no393_b05.g1 MSMg01no393_b05.g1 CHROMAT_FILE:
MSMg01no393_b05.g1 PHD_FILE: MSMg01no393_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:51 2005
         (558 letters)



>mm_chr14_68150606_68151563
          Length = 958

 Score = 1079 bits (558), Expect = 0.0
 Identities = 558/558 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagacttttcaaaaagagcaaggaggtacactgtggtgttttattacagtttcctaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagacttttcaaaaagagcaaggaggtacactgtggtgttttattacagtttcctaag 260

                                                                       
Query: 61  tggtaatagaaaaagaatcacttgattttaaattcttttccccgaggtatataagaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtaatagaaaaagaatcacttgattttaaattcttttccccgaggtatataagaaaca 320

                                                                       
Query: 121 agcaagatagagactccctatcccactctatcactgcaaaataatttgttgttcttgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaagatagagactccctatcccactctatcactgcaaaataatttgttgttcttgttc 380

                                                                       
Query: 181 aagaatctgtgtacttagagacccccagacttgctctgggaagttgaaagggagaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaatctgtgtacttagagacccccagacttgctctgggaagttgaaagggagaagaaa 440

                                                                       
Query: 241 ttgtagggtggagagtcccagctgtaccataattgagaaatttggacggatcatcctcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtagggtggagagtcccagctgtaccataattgagaaatttggacggatcatcctcag 500

                                                                       
Query: 301 acagtgctgtgcttctacactactgtagatcagaaggtcgaatcacacaggaggaagaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagtgctgtgcttctacactactgtagatcagaaggtcgaatcacacaggaggaagaca 560

                                                                       
Query: 361 ctgaacttgaccttgggacaaccttctgggtaacctaccacctccctgaataagaagctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaacttgaccttgggacaaccttctgggtaacctaccacctccctgaataagaagctt 620

                                                                       
Query: 421 ggtcttggaaatgtgtgatgataatcctgattgccaatttgattggactagagtcaatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtcttggaaatgtgtgatgataatcctgattgccaatttgattggactagagtcaatgt 680

                                                                       
Query: 481 ggcttgttaggcagacttctgggagtactttctgggatgactggcatatggaatagcgtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcttgttaggcagacttctgggagtactttctgggatgactggcatatggaatagcgtc 740

                             
Query: 541 taaagtggagagacatga 558
           ||||||||||||||||||
Sbjct: 741 taaagtggagagacatga 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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