BAC Information

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BAC

Clone NameMSMg01-393K07
Chromosome14 (Build37)
Map Location 28,081,387 - 28,081,829
singlet/doubletsinglet
Overlap geneArhgef3
Upstream geneLOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333
Downstream geneLOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393K07.T7 (MSMg01no393_k07.b1)MSMg01-393K07.TJ (MSMg01no393_k07.g1)
ACCAG494889AG494890
length1,070748
length of high quality
(start - end)		---443 (71 - 513)
definitionCHROMAT_FILE: MSMg01no393_k07.b1 PHD_FILE: MSMg01no393_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:39 2005CHROMAT_FILE: MSMg01no393_k07.g1 PHD_FILE: MSMg01no393_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTGTCGTTTGGNGCGGAGAAAACACTCAAACCACAATTAAGAACA
CTAAAACACAAAAGATGAACACAATACACAAACGTAGTTAAATTATTGTT
ATTTTCTTTAAAAATATAAAATTTTTATATACATTATATTTTCGTTTATT
CTTTTTTTCTTACGTCTTCGTACGTCGCTTTCGTCTTATACGCACGCGTT
TCTATTATCGATCTTCTTTAAAATATGTCGAAAAGAAAAAAATAAAAAAC
TATATATTCGTCTATTCATTCTTTTATCTTTATATTATATTACGTATTAT
TACTTGATAAACACAAACAATATGAATACAGAGAAAATAGAGCTAACAGA
ACTAGATATTATTTATATCTGTTCTCTAACGAGTCACCATCATTATAATC
AAACCACAATCATAAACTCAACCCATGAATCCATCTACAACATATTACTA
CTAAAAATTCACATTATAAAGAATAGAATATAACCAACTATATAATCTAA
TACAAATATACCAAATATAACTATTTTACAATGTTATCTACATCAATAAT
AACAGTTATATTAATCTTACGTCATACATTAAATATTCTTTTGTATATCA
CTACCACATAACACGAATTAATTAATAATATACTATCTCGTCTTACGATC
ATTATCCATTCAGTACCGTCCATTAATAACCATATTATATTTTCAAACTA
CTAATAACACGCTAATAAAACAATTAGCTACCACAACAAAACTAATCCAT
ATTAAATAATAAGAAACTATACATCACATGACTTGTATGCATTACCCATA
TTATACTTATATCACATTATTCCAATCATTGCTATCGCTAAAAATTCCCC
TCCTATTATATATTATTACATATCATCATTTCTCATCTTTTTAACATATA
TTATATATTAACAATCTCAATATAAGTAACACTACAATACTCATTATGAT
AATAACAAACAACACTTAATAAGTTTATTATATACTGCCCTCCGCTCTAT
TAAACCACAACTGAATAGAATACAATATCCGTATGACATCACAACTATAA
CCCAATATATTATACTCTAG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACCGGTGGAAAAAACTCCTAGCTTTTTACA
TTACAAATGGTTCTTTAAAGGGCGGTACTCCTTAGAGGTCTTTCTCTCTG
TCCCTCTTCCTATTTCCCTCCCCCTCCCCCACACCTCTCATTCTAGAGTG
AGTACCAAAAGCAGGCCGTGTTGCCAGCGTTATGCTGACTGAATGGGAAC
CTGGCTACTGACCCAGAAAGATGCCCCTCTTATCTAGCAACTTCTTGTTC
AACACACACATCCTGTGGCTGTCTCATCATTTAGGAAGTGGAGTCTAAAC
TGAGAAGTACCTAACGCCCTACCCCTCACACCCACCACCAGGAGCCACTA
ATTGAAACCTACCTCCCCGCCCCCACACACTTTCCACTTATTCAGAGCAA
TAGGCACAAAACAACTCTTTAGCCAGTTCTGATATGTGCCTCAGTCCCTG
CTATGGAGGCAAGGNGGGCTGTTTGAGTCTTCATGTTATTGGCCAGTTTG
GTGCAAAATTTATGAATACCCACAGATCCACCACCTCCTCAGGACTGTTG
CTGTAAGGACTCTCCTGGACATTGCCCCTTATAGCACCAAGACCTAATCC
CCTTAAAGGCCTAAACCCCCGGCCAATCGATAAAGAACACTCTCCTTATT
TAAATAAACTTAATTCTCCGGGGCTTATAAAAATTTAAATAAGGGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_k07.g1 MSMg01no393_k07.g1 CHROMAT_FILE:
MSMg01no393_k07.g1 PHD_FILE: MSMg01no393_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:40 2005
         (443 letters)



>mm_chr14_28081063_28081905
          Length = 843

 Score =  810 bits (419), Expect = 0.0
 Identities = 437/443 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accggtggaaaaaactcctagctttttacattacaaatggttctttaaagggcggtactc 60
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 767 accggtggaaaaaactcctagctttttacatcacaaatggttctttaaaggggggtactc 708

                                                                       
Query: 61  cttagaggtctttctctctgtccctcttcctatttccctccccctcccccacacctctca 120
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 707 cttagaggtctttctctttgtccctcttcctctttccctccccctcccccacacctctca 648

                                                                       
Query: 121 ttctagagtgagtaccaaaagcaggccgtgttgccagcgttatgctgactgaatgggaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttctagagtgagtaccaaaagcaggccgtgttgccagcgttatgctgactgaatgggaac 588

                                                                       
Query: 181 ctggctactgacccagaaagatgcccctcttatctagcaacttcttgttcaacacacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 587 ctggctactgacccagaaagatgcccctcttatctagcaacttcttgttcaacgcacaca 528

                                                                       
Query: 241 tcctgtggctgtctcatcatttaggaagtggagtctaaactgagaagtacctaacgccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tcctgtggctgtctcatcatttaggaagtggagtctaaactgagaagtacctaacgccct 468

                                                                       
Query: 301 acccctcacacccaccaccaggagccactaattgaaacctacctccccgcccccacacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 acccctcacacccaccaccaggagccactaattgaaacctacctccccgcccccacacac 408

                                                                       
Query: 361 tttccacttattcagagcaataggcacaaaacaactctttagccagttctgatatgtgcc 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 407 tttccacttattcagagcaataagcacaaaacaactctttagccagttctgatatgtgcc 348

                                  
Query: 421 tcagtccctgctatggaggcaag 443
           |||||||||||||||||||||||
Sbjct: 347 tcagtccctgctatggaggcaag 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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