BAC Information

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BAC

Clone NameMSMg01-395I04
Chromosome14 (Build37)
Map Location 34,361,167 - 34,361,332
singlet/doubletsinglet
Overlap geneFrmpd2
Upstream geneErcc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681
Downstream geneLOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395I04.T7 (MSMg01no395_i04.b1)MSMg01-395I04.TJ (MSMg01no395_i04.g1)
ACCAG496311AG496312
length776748
length of high quality
(start - end)
170 (85 - 254)244 (81 - 324)
definitionCHROMAT_FILE: MSMg01no395_i04.b1 PHD_FILE: MSMg01no395_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:23 2005CHROMAT_FILE: MSMg01no395_i04.g1 PHD_FILE: MSMg01no395_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAC
GAGGCGCGGAANTCAAGAGGTTGCAAAAATTTTTTGATTCAATTAGGGCA
GTTTCAGTGTAAAATAAAGGTCACTCCCTTCCTTTAGAGCAGTGAGAAAC
AATTCAGGGTAGAGAGAAAGCTCAACCCTGTGCTAAACTGGGGTCACCAA
AGCCAAGTTTGTCTTCTGGGGGAGAATAAAAAGCTCACAATGTACCCAAG
TCAAAATGTATTCACCAATGCCAGAGCTGTTTTCTAGGTAAGAGTAAAGA
CAAAGTCCACAGCTCACAATGTCTCTTATTTTGAAGCGGGACACCAGTAA
CAGCCCTATCTTCCTAAGGAATACTGTCTCCCAGCAGCAAGCATCTTATA
GAATTTCTACCCTATTTTCAGCACGACCTTTACATCCGTGTTTTTTTATT
GACATTATGAACCGCATAACACTTTCCTTTTCCCAGACTTTTAATTTATC
CCTATAGACCCACATTTCTATTTCTCTCATGAGCGAATCTTGAGCTGATC
CTCTCATTCTGTGCTTTTTACCTATGATATTCCTTTTTTTCACATGATGT
TTTTCTCTCCCCTGTAATAATCCTCCCTCATCATCGTTTACCTGTTCCCT
TCAACAATATGTATCCCCTCTCTTTTCTCCCTCCTTTCCCCTCTATTTAC
CTCGTTTCCCACATATTATTCTCACACTTCCCCTATTACCTTTTATTTCT
CTCACCTTTTTTTTCCATCTTTTTTN
CCCCNNCCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTACTAAAAAAATTCTGGGGCTGAAGAGATGGC
TAAGAATACTAGCTGCTCTCTCAAAGGACCGAGTTTTAATTCCCAACATC
CACATGGCAGTTCACAACCATCTACAACTCCAGTTCCAGGGGATCCAGTG
CCCTCTGCTGGCCTCTACAAGCACTAGGCAAACAAGCAGCATACAGACAT
ACATGTATTTAACACACACACACACACACACACACACACACACACACACA
CACAGAATAAATTATTATGTAATTTGGTATTACTACAAGGCTTTAAATAA
GACACAAGTCAATGATTACTGAACCGAAACTATCCTGATAATATGTATAC
AAAAGACTAAAAATCACAACTCCTTTAACATTTTGTTTTGGAGGAGGAAC
TCAAGGTATTAATAAATATGAATACTTGATATGAGGATATTAGAAAAGAA
TGAAAGCCACCGTTCTCATCACACTATTCTACTATTACCATCTAATAATT
CCCCATTTTTCTACTATTGTCCCGTCACCTTTAATAGAGACCTATTACCG
CTTACGATCCCTTCCTCCGTGGTCTCAAATGAAAGCGCCTCTCCCTTTCT
ATATATTTCTTTTTTCCTGATCACACAAACGGTGTTTCTTTGTCCTTATT
TGCCCTTGCTCCGCTTTATTACCCTACCCATGCTTTATCTTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_i04.b1 MSMg01no395_i04.b1 CHROMAT_FILE:
MSMg01no395_i04.b1 PHD_FILE: MSMg01no395_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:23 2005
         (170 letters)



>mm_chr14_34360967_34361536
          Length = 570

 Score =  313 bits (162), Expect = 3e-90
 Identities = 165/166 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgattcaattagggcagtttcagtgtaaaataaaggtcactcccttcctttagagcagtg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 366 tgattcaattagggcagtttcagtggaaaataaaggtcactcccttcctttagagcagtg 307

                                                                       
Query: 61  agaaacaattcagggtagagagaaagctcaaccctgtgctaaactggggtcaccaaagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agaaacaattcagggtagagagaaagctcaaccctgtgctaaactggggtcaccaaagcc 247

                                                         
Query: 121 aagtttgtcttctgggggagaataaaaagctcacaatgtacccaag 166
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aagtttgtcttctgggggagaataaaaagctcacaatgtacccaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)