BAC Information

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BAC

Clone NameMSMg01-395I12
Chromosome14 (Build37)
Map Location 30,103,939 - 30,104,107
singlet/doubletsinglet
Overlap geneCacna2d3
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218, Lrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395I12.T7 (MSMg01no395_i12.b1)MSMg01-395I12.TJ (MSMg01no395_i12.g1)
ACCAG496327AG496328
length1,280751
length of high quality
(start - end)
---169 (78 - 246)
definitionCHROMAT_FILE: MSMg01no395_i12.b1 PHD_FILE: MSMg01no395_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:24 2005CHROMAT_FILE: MSMg01no395_i12.g1 PHD_FILE: MSMg01no395_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGTTCCCCATACTATATTTATACAGTTTTAGCAGCCACATTATTTCCCG
CTAGTGTTATTCAATATTATATATATTAACTCTTATACTACCACGAGAGA
GCCACGCCGCTGACCCCGCACGCGCGTCTGGAAATTATGCTGCGCGTGTG
TTCGCGCGCACATGTGCGTGTGTTCGACGCGCGCCNGCAGAGGTACTCAT
GTGCGCGATGTGTGTAGTTCTCTCGTNCTCGCTAGTAGACTGATCGAACT
CACACGCTACTTCCCGCTGTGGGAGTTGCTGAGTGAATCGGACGCATAGC
ATATGCGTCTTCTATAACAAACATCTGCCTGGCCGTGCTGAACTTTCCGC
GCGTGATACTTCGCCTATTTCACGAGAGCATGTGGNCGCGTGTATATGAG
AGGAGAGAGGCGACGCAGCGATGCGGTATGTGTGAGAGATGGAGTTAGCG
GCGAGGGGAGCGACGGCGCGGGGGCGCGCGGGTTATATANATGGGCGTAT
CATATATGGGTTAGGTAGGATAGCGGATGCAGACGGAGAGCGCGTAGACA
GTAGTTGAGCGTTATTTAGGGAGAGGCGGTGCGGCGTGCAAGCGCTGTGC
GCGGGAATTATATATGATGACGCGGGCGACGAGATGTACATGCACGCCAG
CTAGCGTACGATGTGCGCGGCGGCCGAGTCTCGATTATGTTTTGTATCCA
GCGCACGCTGGTTGTGGTCCTACCGCGCGCATTCTGTCAGCGTGCGCGCG
CCGAGGCGCCAATCTCAATAGCTGTATATATTGTATATGGACTAGCGCAT
GTCTGAGTTGACGCGTGTCGTGGCGCTGTATATTATGTGCGCCGCGCGCG
CGCGACGATGTGCGTGAGACGTGTAGTGTCGCTAGTACGCGGAGCGGAAT
TAAGTTGTCTGCGGGTCGCGATAATATATCGACAAGAGCGATTTTGTGTC
TGCTTTTATGCGTTCCGCCCACACTCATCATCAGTGTTGTCTCCGTCTCA
CNCGCGCGGTGTGCGCGTTCGCGCGGCGCGCGCCGTGTGAGCGAGATATG
AATNGGCGATATGCGCCATTATATGAGCAGCACGTCAGACTAGACGCACA
CCGCCCAATTGATAATGAGTCGAAGCGTATATCGCACCACNTGGTTGATG
TATGGCACGCACTCGCCACGCGCAACATGCATTGCGNACGCGCGGACGGC
AGTTCACGAGAGATANTTGAGAGAGGCGTAGAGTACATGTACGCGCGCTG
TATCATGTATGAATCTATGCATGTGANTAT
CTCGATGATGTGNGTAGGNCGGGAGGNCGCCCGTCAATATCATTTAGGNN
GAACNANAGATTTCCAAGAACAATGCCATGACATTCATATGCACATACAA
TCTCTGTTTTATGAACTTCCCCACGAGGGAACAAGTGATAAACTTACATA
GCACCCCAATATGATTTAGCACCTCAGTAAAATAAGATGATGTGGAAGGT
CTAAGCAGTCATCTTTCTCCATTATTTTGAACACTAGCTATTTAGTATTT
ATGTTGTGTCTGACATGTAGTAATTGGCAATCTTTGAGACTATAAAAACA
GGAAGTGCAGCCATTAGATTATTTGATCGNAAGAGTGGAACATGATTCCC
ATAAAACAGTATTTCTCACGCCTAACTGAGCCCCAGCCCTACCTGAAGGG
CTGCTTCCTATACACGCCCCAACCTGGGGCTTCTGACTCACTATGTGGGT
GGGGCCTGAGAGTAAAGACACCAAATAGGTCACTGAATGAAGTCGACGAC
ATTGATGGAAACCCCACACATAAGAGATAGCTCAAGAATCAGGGTCTTCA
CCACTCCTGTCCTCCTCTTTAGATGTGTAAGACCTGATCTCTTGTNACAC
TACACTAGACAGATATATTTCCTGCCCTATAGCCTGATAATCTTGTTTTT
TTTGGTCAACACATATAGAAATTGAGCCTAAACTCCAGACTTCCTAAGGA
TTGTTTTTACGGGCGGCAAACGCTCTGCTTTACAATTGTTTCTTTTTCCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_i12.g1 MSMg01no395_i12.g1 CHROMAT_FILE:
MSMg01no395_i12.g1 PHD_FILE: MSMg01no395_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:24 2005
         (169 letters)



>mm_chr14_30103739_30104307
          Length = 569

 Score =  327 bits (169), Expect = 2e-94
 Identities = 169/169 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgacattcatatgcacatacaatctctgttttatgaacttccccacgagggaacaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atgacattcatatgcacatacaatctctgttttatgaacttccccacgagggaacaagtg 310

                                                                       
Query: 61  ataaacttacatagcaccccaatatgatttagcacctcagtaaaataagatgatgtggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ataaacttacatagcaccccaatatgatttagcacctcagtaaaataagatgatgtggaa 250

                                                            
Query: 121 ggtctaagcagtcatctttctccattattttgaacactagctatttagt 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggtctaagcagtcatctttctccattattttgaacactagctatttagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)