BAC Information

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BAC

Clone NameMSMg01-396F17
Chromosome14 (Build37)
Map Location 30,880,749 - 30,881,187
singlet/doubletsinglet
Overlap geneCacna1d
Upstream geneCacna2d3, Ppia-ps15, EG665431, Selk, Actr8, Il17rb, Chdh
Downstream geneLOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396F17.T7 (MSMg01no396_f17.b1)MSMg01-396F17.TJ (MSMg01no396_f17.g1)
ACCAG496954AG496955
length773758
length of high quality
(start - end)		439 (38 - 476)437 (64 - 500)
definitionCHROMAT_FILE: MSMg01no396_f17.b1 PHD_FILE: MSMg01no396_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:27 2005CHROMAT_FILE: MSMg01no396_f17.g1 PHD_FILE: MSMg01no396_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGCATCCGCGGAATTCAAG
GCCTTTCCCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAAC
ATCAAAGTAAATAGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGAC
TAGACAAGGCTGCCCACATTCTCCCTACCTATTCAACATTGTACTTGAAG
TCCTAGCCAGAGCAATTCGACAGCAAAAGGAGATCAAGCGGATACAAATT
GGAAAGGAAGAAGTCAAAATAACACTTTTTGCAGATGATATGATAGTATA
TATAAGTGACTCTAGAAATTCCACCAGAGAACTCCTAAACCTGATAAACA
GGTTCAATGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAACAGCC
TTTCTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGGAACAAC
ACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGCGTGACTCTAA
CTAAGCAAGTGAAAGATCTGTATGATAAGAACTTTAAGTCTCTAANGAAA
GAAATTTAAGAAGACTTCGAANAAGGGAAGGAATCTCCCTGCTCCTGGAT
CGCGAGGAATAATATAAAAAAAGGGGGTAATTTGCCCAAAGCAACCCACG
GATTCCATGCGGACCCCAACCAAATTCCAACCCCTTCTTTCTCGAATGGG
AAGGGGGAACCCCAAATCTCCTTCCATAACCAAAACCCGGGAAGGGGTAA
CCTTTCTCCCAAAAAAAAAACCG

GAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGTGCAGTCTGTTTTGGGGTGAACTGGCCTTGAGAA
ATGTTATATTCCTCCTGAGCCTGAGCCAAGGAAGCCCTGGTGTGATGGAG
GAGCAAGTGAAGAAACCCGGGGCTCTGTGTTGATCTGAACTCATATCTCC
CTGACTGGCTACTGGTTCTTCTCCACCATCCAGTATGGCACCATCCATAG
GGAAACAAGCCAAGATATTTGCTCTGCAAAGCCCATGCTTGCCCTCTCTC
CAGCTTCTGATCACTCTGTCCATCAGCCATGGCTAGGCACCATGGCTGGA
TAACTCCTCGTGGGCCTCATAACTTCTACATAACAACTCTGCTCACTCTT
CTGAGAGAGGGAGAAGTTACATGACTGGCCCAGGTCAACTGGCCAAGGCC
TGAGCCCAGGGCCCTTCTCTCCCCCAACTTTACCTCTCTTCAGAAAGTGG
CTTTGGTCACACCCAACCCCCTGCTTTCCTCTGAGCTGTCATTTCTGTGG
TATAAACGTACCCCTGTCTCTTTTTAGCTCTTCCTAGAATGCCCGTGGTT
GTTGGTTCTCTTGTCTTTTTATAGCCTATATTCCATCCTCTTTTCTTTGA
TTCGGAATACCTTTTTGTATCCCTGCGTTATCCCGAGCCCTTGCTAACTT
CTTGATGGCCCACTACACGCTCTTATTGGGTTTTTTCCTCTATATGTTTT
CTTTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_f17.g1 MSMg01no396_f17.g1 CHROMAT_FILE:
MSMg01no396_f17.g1 PHD_FILE: MSMg01no396_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:27 2005
         (437 letters)



>mm_chr14_30880549_30881385
          Length = 837

 Score =  814 bits (421), Expect = 0.0
 Identities = 434/439 (98%), Gaps = 2/439 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtgcagtctgttttggggtgaactggccttgagaaatgttatattcctcctgagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtgcagtctgttttggggtgaactggccttgagaaatgttatattcctcctgagcctg 260

                                                                       
Query: 61  agccaaggaagccctggtgtgatggaggagcaagtgaagaaacccggggctctgtgttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccaaggaagccctggtgtgatggaggagcaagtgaagaaacccggggctctgtgttga 320

                                                                       
Query: 121 tctgaactcatatctccctgactggctactggttcttctccaccatccagtatggcacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgaactcatatctccctgactggctactggttcttctccaccatccagtatggcacca 380

                                                                       
Query: 181 tccatagggaaacaagccaagatatttgctctgcaaagcccatgcttgccctctctccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccatagggaaacaagccaagatatttgctctgcaaagcccatgcttgccctctctccag 440

                                                                       
Query: 241 cttctgatcactctgtccatcagccatggctaggcaccatggctggataactcctcgtgg 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctgaccactctgtccatcagccatggctaggcaccatggctggataactcctcgtgg 500

                                                                       
Query: 301 gcctcataacttctacataacaactctgctcactcttctgagagagggagaagttacatg 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctcataacttctacataacaactctgctcactcttctgagagagggagaagttacatg 560

                                                                       
Query: 361 actggcccaggtcaactggccaaggcctgagcccagggcccttctctcccccaactttac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actggcccaggtcaactggccaaggcctgagcccagggcccttctctcccccaactttac 620

                              
Query: 421 ctctct--tcagaaagtgg 437
           ||||||  ||||| |||||
Sbjct: 621 ctctctcttcagagagtgg 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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