MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-396H18
Chromosome	14 (Build37)
Map Location	65,844,516 - 65,844,986
singlet/doublet	singlet
Overlap gene	Fzd3
Upstream gene	Msra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, LOC668286
Downstream gene	Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b
Link	Open Mouse BAC browser

Click to get alignment info.

name	Msra (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110265 MGI:106916
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kif13b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16554 MGI:1098265
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hmbox1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:219150 MGI:2445066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043657 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043657
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 23 ESTs, 7 Proteins pseudo : _no_value

name	D14Ertd231e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:210925 MGI:1098533
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Extl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54616 MGI:1860765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fzd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14365 MGI:108476
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668286 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668286
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Fbxo16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50759 MGI:1354706
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp395 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380912 MGI:2682318
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pnoc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18155 MGI:105308
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Elp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74195 MGI:1921445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm600 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:239151 MGI:2685446
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins

name	Scara5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71145 MGI:1918395
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pbk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52033 MGI:1289156
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Esco2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71988 MGI:1919238
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc25 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67179 MGI:1914429
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Scara3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:219151 MGI:2444418
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Clu (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12759 MGI:88423
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gulo (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268756 MGI:1353434
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adam2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11495 MGI:1340894
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043675 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043675
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 325 ESTs, 6 Proteins

name	Ephx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13850 MGI:99500
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Chrna2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110902 MGI:87886
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptk2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19229 MGI:104908
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Msra (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60097936 GeneID:110265 MGI:106916
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : methionine sulfoxide reductase A transcript_id : NM_026322.3

name	Kif13b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487162 GeneID:16554 MGI:1098265
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinesin family member 13B transcript_id : NM_001081177.1

name	Hmbox1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802945 GeneID:219150 MGI:2445066
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeobox containing 1 transcript_id : NM_177338.4

name	D14Ertd231e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371690 GeneID:210925 MGI:1098533
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 14, ERATO Doi 231, expressed transcript_id : NM_153414.3

name	Extl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46852188 GeneID:54616 MGI:1860765
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : exostoses (multiple)-like 3 transcript_id : NM_018788.2

name	Fzd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946845 GeneID:14365 MGI:108476
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : frizzled homolog 3 (Drosophila) transcript_id : NM_021458.1

name	Fbxo16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7657078 GeneID:50759 MGI:1354706
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box protein 16 transcript_id : NM_015795.1

name	Zfp395 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39841058 GeneID:380912 MGI:2682318
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 395 transcript_id : NM_199029.1

name	Pnoc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33468910 GeneID:18155 MGI:105308
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : prepronociceptin transcript_id : NM_010932.1

name	Elp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803224 GeneID:74195 MGI:1921445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : elongation protein 3 homolog (S. cerevisiae) transcript_id : NM_028811.2

name	Gm600 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149265646 GeneID:239151 MGI:2685446
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins product : gene model 600, (NCBI) transcript_id : XM_001479352.1

name	Scara5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22296588 GeneID:71145 MGI:1918395
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : scavenger receptor class A, member 5 (putative) transcript_id : NM_028903.1

name	Pbk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802176 GeneID:52033 MGI:1289156
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PDZ binding kinase transcript_id : NM_023209.2

name	Esco2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859705 GeneID:71988 MGI:1919238
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : establishment of cohesion 1 homolog 2 (S. cerevisiae) transcript_id : NM_028039.1

name	Ccdc25 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119672913 GeneID:67179 MGI:1914429
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 25 transcript_id : NM_145944.4

name	Scara3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377080 GeneID:219151 MGI:2444418
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : scavenger receptor class A, member 3 transcript_id : NM_172604.2

name	Clu (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7304966 GeneID:12759 MGI:88423
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : clusterin transcript_id : NM_013492.1

name	Gulo (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892400 GeneID:268756 MGI:1353434
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gulonolactone (L-) oxidase transcript_id : NM_178747.3

name	Adam2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116089326 GeneID:11495 MGI:1340894
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : a disintegrin and metallopeptidase domain 2 transcript_id : NM_009618.2

name	LOC100043675 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265778 GeneID:100043675
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 325 ESTs, 6 Proteins product : similar to Translocase of inner mitochondrial membrane 23 homolog (yeast) transcript_id : XM_001480621.1

name	Ephx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131083 GeneID:13850 MGI:99500
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : epoxide hydrolase 2, cytoplasmic transcript_id : NM_007940.3

name	Chrna2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892762 GeneID:110902 MGI:87886
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal) transcript_id : NM_144803.2

name	Ptk2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387203 GeneID:19229 MGI:104908
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PTK2 protein tyrosine kinase 2 beta transcript_id : NM_172498.2

name	Msra (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981013 CCDS:CCDS27209.1 GeneID:110265 MGI:106916
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008113 - protein-methionine-S-oxide reductase activity [Evidence IMP] GO_process : GO:0019538 - protein metabolism [Evidence IEA] codon_start : 1 product : methionine sulfoxide reductase A protein_id : NP_080598.2

name	Kif13b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487163 GeneID:16554 MGI:1098265
definition	GO_component : GO:0005871 - kinesin complex [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005875 - microtubule associated complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA]; GO:0007017 - microtubule-based process [Evidence IEA] codon_start : 1 note : kinesin 13B; N-3 kinesin product : kinesin family member 13B protein_id : NP_001074646.1

name	Hmbox1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542626 GeneID:219150 MGI:2445066
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : homeobox containing 1 protein_id : NP_796312.2

name	D14Ertd231e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981980 CCDS:CCDS27210.1 GeneID:210925 MGI:1098533
definition	codon_start : 1 product : cDNA sequence BC028953 protein_id : NP_700463.2

name	Extl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46852189 CCDS:CCDS27211.1 GeneID:54616 MGI:1860765
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 note : exostosin product : exostoses (multiple)-like 3 protein_id : NP_061258.2

name	Fzd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946846 CCDS:CCDS27212.1 GeneID:14365 MGI:108476
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004926 - non-G-protein coupled 7TM receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0001736 - establishment of planar polarity [Evidence IGI]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0042472 - inner ear morphogenesis [Evidence IGI]; GO:0001843 - neural tube closure [Evidence IGI]; GO:0007165 - signal transduction [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 product : frizzled 3 protein_id : NP_067433.1

name	Fbxo16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7657079 GeneID:50759 MGI:1354706
definition	GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : F-box only protein 16 product : F-box protein 16 protein_id : NP_056610.1

name	Zfp395 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39841059 GeneID:380912 MGI:2682318
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence ISS] codon_start : 1 exception : mismatches in translation note : papillomavirus regulatory factor product : zinc finger protein 395 protein_id : NP_950194.1

name	Pnoc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468911 CCDS:CCDS27213.1 GeneID:18155 MGI:105308
definition	GO_function : GO:0001515 - opioid peptide activity [Evidence IEA] GO_process : GO:0007218 - neuropeptide signaling pathway [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence IEA] codon_start : 1 note : proorphanin; orphanin FQ; neuropeptide nociceptin 1 product : prepronociceptin protein_id : NP_035062.1

name	Elp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33469023 GeneID:74195 MGI:1921445
definition	GO_component : GO:0016469 - proton-transporting two-sector ATPase complex [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA] GO_process : GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA] codon_start : 1 product : elongation protein 3 homolog protein_id : NP_083087.1

name	Gm600 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149265647 GeneID:239151 MGI:2685446
definition	codon_start : 1 product : similar to hCG17291 protein_id : XP_001479402.1

name	Scara5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22296589 CCDS:CCDS27214.1 GeneID:71145 MGI:1918395
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0005044 - scavenger receptor activity [Evidence IEA] GO_process : GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : scavenger receptor class A, member 5 protein_id : NP_083179.1

name	Pbk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963575 CCDS:CCDS27215.1 GeneID:52033 MGI:1289156
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0004674 - protein serine/threonine kinase activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0018105 - peptidyl-serine phosphorylation [Evidence ISS]; GO:0018107 - peptidyl-threonine phosphorylation [Evidence ISS] codon_start : 1 note : T-LAK cell-originated protein kinase product : MAPKK-like protein kinase protein_id : NP_075698.1

name	Esco2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34787410 CCDS:CCDS27216.1 GeneID:71988 MGI:1919238
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation product : establishment of cohesion 1 homolog 2 protein_id : NP_082315.2

name	Ccdc25 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22164768 CCDS:CCDS27217.1 GeneID:67179 MGI:1914429
definition	codon_start : 1 product : coiled-coil domain containing 25 protein_id : NP_666056.1

name	Scara3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369868 GeneID:219151 MGI:2444418
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : scavenger receptor class A, member 3 protein_id : NP_766192.1

name	Clu (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304967 GeneID:12759 MGI:88423
definition	GO_process : GO:0008219 - cell death [Evidence IEA] codon_start : 1 exception : mismatches in translation note : complement lysis inhibitor; testosterone repressed prostate message; Apolipoprotein J product : clusterin protein_id : NP_038520.1

name	Gulo (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520195 GeneID:268756 MGI:1353434
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005792 - microsome [Evidence IEA] GO_function : GO:0003885 - D-arabinono-1,4-lactone oxidase activity [Evidence IEA]; GO:0050105 - L-gulonolactone oxidase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016899 - oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor [Evidence IEA] GO_process : GO:0009058 - biosynthesis [Evidence IEA]; GO:0006118 - electron transport [Evidence IEA]; GO:0019853 - L-ascorbic acid biosynthesis [Evidence IMP] codon_start : 1 note : L-gulono-gamma-lactone oxidase product : gulonolactone (L-) oxidase protein_id : NP_848862.1

name	Adam2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116089327 GeneID:11495 MGI:1340894
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007229 - integrin-mediated signaling pathway [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : fertilin beta; a disintegrin and metalloprotease domain 2 product : a disintegrin and metalloprotease domain 2 (fertilin beta) protein_id : NP_033748.2

name	LOC100043675 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265779 GeneID:100043675
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480671.1

name	Ephx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982393 CCDS:CCDS27218.1 GeneID:13850 MGI:99500
definition	GO_component : GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0019439 - aromatic compound catabolism [Evidence IEA]; GO:0006725 - aromatic compound metabolism [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA]; GO:0009636 - response to toxin [Evidence IEA]; GO:0006805 - xenobiotic metabolism [Evidence IEA] codon_start : 1 product : epoxide hydrolase 2, cytoplasmic protein_id : NP_031966.2

name	Chrna2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450163 CCDS:CCDS27219.1 GeneID:110902 MGI:87886
definition	GO_component : GO:0005624 - membrane fraction [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007271 - synaptic transmission, cholinergic [Evidence IEA] codon_start : 1 product : cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal) protein_id : NP_659052.1

name	Ptk2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369678 CCDS:CCDS27220.1 GeneID:19229 MGI:104908
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IDA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IDA] codon_start : 1 exception : mismatches in translation note : protein tyrosine kinase 2 beta; cellular adhesion kinase beta; proline-rich tyrosine kinase 2; calcium-dependent tyrosine kinase; related adhesion focal tyrosine kinase product : PTK2 protein tyrosine kinase 2 beta protein_id : NP_766086.1

name	LOC668286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668286
definition	number : 1 pseudo : _no_value

name	LOC100043657 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149265777 GeneID:100043657
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 23 ESTs, 7 Proteins product : similar to Nonhistone chromosomal protein HMG-17 (High-mobility group nucleosome-binding domain-containing protein 2) pseudo : _no_value transcript_id : XR_034757.1

clone name	MSMg01-400H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509M21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-354P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122B19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-497A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187F06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-534J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323A19
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-396H18.T7 (MSMg01no396_h18.b1)	MSMg01-396H18.TJ (MSMg01no396_h18.g1)
ACC	AG497051	AG497052
length	764	753
length of high quality (start - end)	249 (61 - 309)	469 (67 - 535)
definition	CHROMAT_FILE: MSMg01no396_h18.b1 PHD_FILE: MSMg01no396_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:37 2005	CHROMAT_FILE: MSMg01no396_h18.g1 PHD_FILE: MSMg01no396_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:37 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TGCGAGCGCTATACGACTCACTATATTCAGAGAATCCGCGGAATTCCAGG TGGTTCTGAACTACCCATAAGTGCTAGGAACTGAAGCTGGGTCCTCTATA AGAGCAGTTTGTGCTCTTAACCACTGAACCATCTCTCCAGCCTCTGAATT TATTTTTATCAATTTTGCAGTAGTTAGGATTGAACCTAGGGCTCTGTGAA TGACCAGGCAGATGTGCTATGGCTGAGTTACATCCCTAAATGCCTTTGAA TATTTTGGTAAGACCTCCTAGAGCAAATAGCTCCTAAACACCACTCAGGA ACCAAAACAACTTTGTGACTGTCTTCTTTCCCCCAGAGGAGTCAAGTGTC TATATGACAGGCATGGAACCCAGGCCTAGCCTCTGGCTGGGTTAGACCCT CAGTCTGTGCCCTAATCTCTGATTCAGACACCCAAATGGCCCTTTGCTCA GTCTCTTCAGAAGCTCAGCTTTACAAATCAATTTGGCACCGGCCAGATCC CAGATGCTCATGCAAACTCTGGCTTAATATAGCAACGTCATCATCATGGC TGAAAAAACGTGTCCAACTCACTTAAAAACCCCCCGGTTCATCCTGGGCA AAATACTTGATAAGGACCCCTCACCCCACCCTATCAACCCTATTGCTCCT TTGCCATCCGGGTCTCAAAACGGTTACGGAAATCTTAAGCCCCCGAATTT GCCTTCAACCCTTTTCCTTAACAAAAAAGTTTGTGAACGAATGGGTCCTG CATCTCGAATCTCC	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXAATGTTTCATTTGTACCAGTTACACTAAAAAAAT CTATTCTAGGATTATCAACAACTTTTGAGAAATATAACTATAAAATGCTT CAAATCTCTTAAGACACACTAATTAAATAAAAGGAATTCTTTAAGGAAAA ACAAACAAACAAAAAAATACCCAAGTACCTGAGAAATTATCAACATGACA CCTGCTCCAGAAGTAAATGTCACTGCTTTAAAAGATATTTTTACAATTAT GTGCATTTCTCATAGAGGGCAGAGGAGTCAGATTTCCCTGAAGGGCAAGT GTGGGTGCTGGAAACTGAACTAAGGCCTTCCACAAGAAAAGTACACACTC TTAACAACTAATTCACTCTTTTTCAATTGTAAAATAAGCATGACTGAGTA AATTTAGGTTTAAATATTCTTTTTTTTTTAAATTTTTGGAGACAGTATGC CATATATCTCATCCCAGCCTTGAACTCTATACAGTCAAGAATGACCTTGA ACTTCTCATCTTCCTGCTTCTACTTTCAGAGTGCTGGGATTGCACGTGCA CACCACTAACGGTGGGTTTTCATGTTGTTCACGATGAAACCTAGGGCTTT GTGCTTCCAGAAACTCTAACCACTGAGAATTTCCCTGGGCAATAATAATT ACTTTTATTAGGGGGCGCGATTCCTTTTTTAAAAAAAAATGAACATTTTC GAN
quality values	Open. Hide. 7 15 15 6 6 6 11 15 19 19 10 10 10 26 30 48 26 19 17 17 16 22 25 12 10 9 12 9 11 10 10 9 9 13 12 16 19 19 30 30 30 26 26 30 32 30 30 30 19 21 10 7 7 7 9 7 9 11 13 18 21 28 30 21 26 21 28 22 29 41 57 57 57 57 57 57 57 53 53 53 50 50 50 53 57 57 68 59 59 59 59 57 57 57 57 57 57 57 57 59 59 68 57 57 48 54 57 57 59 48 43 37 37 43 44 57 57 57 59 57 57 57 57 47 51 57 57 57 47 54 54 57 57 68 68 57 57 57 57 57 57 43 50 50 57 57 68 68 68 68 68 68 68 68 68 68 50 50 50 50 47 52 57 57 57 57 57 57 57 57 59 59 59 59 59 57 50 50 50 50 50 57 57 57 57 59 59 54 54 59 59 59 59 59 59 57 57 50 50 50 50 68 57 57 57 52 52 52 52 52 52 57 57 68 68 68 68 57 57 57 57 57 57 57 57 54 54 57 57 59 59 59 59 59 59 68 68 68 48 43 32 28 28 33 42 44 44 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 48 48 42 44 39 43 46 46 46 48 48 48 57 57 57 59 48 57 48 59 59 48 57 48 57 57 50 57 57 57 48 48 48 57 48 48 48 48 46 46 36 28 20 12 11 11 8 8 7 7 9 10 12 21 23 34 59 59 59 59 59 59 59 59 59 59 59 59 59 48 48 57 57 57 57 48 57 59 48 48 48 59 59 59 59 59 59 54 54 48 57 47 43 43 46 46 59 59 57 68 54 48 48 48 48 48 48 57 54 54 54 59 54 48 48 48 59 59 59 59 57 59 59 59 41 40 40 43 37 43 43 43 43 43 39 30 26 15 15 11 23 11 11 11 20 27 32 47 41 41 59 59 59 59 47 47 39 39 39 39 35 39 39 39 39 39 39 35 35 35 39 34 36 31 35 36 39 34 46 46 46 48 41 34 36 36 43 43 57 59 57 43 43 37 39 39 39 39 39 41 34 25 25 25 34 36 34 26 20 18 18 20 22 20 20 20 32 32 34 20 20 23 23 23 22 18 16 12 12 16 11 17 24 20 20 28 24 24 28 34 37 39 39 35 35 28 28 23 23 19 24 25 30 37 30 24 13 16 10 10 10 13 15 22 19 10 10 10 13 13 16 21 15 10 8 8 8 8 8 10 11 13 10 8 8 8 10 10 12 12 11 12 14 13 11 9 9 14 11 8 8 12 8 8 8 8 8 19 14 12 11 14 18 14 13 13 10 10 10 15 12 14 16 15 15 15 19 17 22 30 18 9 9 10 8 8 8 8 10 10 8 9 11 18 19 9 9 9 9 9 12 12 9 9 8 8 8 6 6 8 7 11 13 17 14 14 12 12 12 15 15 16 16 11 17 9 9 7 8 8 8 8 8 11 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 13 10 13 10 8 8 9 9 8 8 15 12 14 14 6 10 6 6 8 8 8 12 10 9 9 9 12 9 10 10 10 11 13 16 11 11 8 10 10 10 10 8 9 9 12 12 12 12 9 8 8 8 10 10 8 6 6 8 8 10 10 8 6 6 7 8 8 8 8 8 8 8 8 8 8 6 9 10 10 11 11 12 12 12 9 9 9 6 6 6 6 8 8 10 8 8 8 8	Open. Hide. 9 9 9 9 9 9 9 24 31 37 36 34 32 28 32 31 31 37 37 39 34 21 11 7 8 8 8 8 13 9 12 12 25 22 37 32 31 32 39 29 29 30 31 31 31 41 42 41 39 25 23 11 11 16 16 27 23 21 21 30 23 33 33 33 33 33 34 36 36 48 53 42 37 33 33 33 42 44 57 57 47 47 40 40 36 47 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 48 41 41 41 42 48 50 68 68 68 68 68 68 68 68 51 68 68 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 59 59 59 68 68 68 68 68 59 59 59 59 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 68 62 62 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 43 38 34 17 17 17 28 20 34 38 59 59 59 68 59 59 59 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 59 59 54 54 54 59 59 59 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 57 57 54 54 54 57 57 57 59 59 59 57 57 57 54 54 57 57 68 59 59 59 59 57 57 48 48 48 57 59 59 48 48 48 48 48 48 59 59 59 59 59 59 59 41 41 41 37 37 41 41 41 43 34 34 20 20 20 32 31 31 31 31 34 37 37 32 29 29 32 37 41 41 46 46 46 46 43 46 46 37 37 29 23 17 20 19 32 39 41 37 37 41 41 41 39 39 32 28 16 23 12 12 11 12 12 18 14 12 12 12 14 16 18 16 16 19 17 18 21 24 34 35 27 18 18 18 17 15 15 35 22 28 13 13 12 25 21 24 12 13 8 8 8 8 11 11 11 11 11 11 11 11 13 13 19 21 10 9 9 9 9 12 10 16 11 11 11 11 12 12 12 6 8 10 7 6 11 15 10 10 10 16 14 17 19 16 15 10 10 10 12 12 18 15 16 11 17 10 10 10 13 12 14 18 18 10 8 8 8 8 8 9 9 10 12 9 9 9 9 10 9 9 9 9 9 8 8 8 8 8 8 12 10 10 11 14 8 8 8 8 6 7 8 8 9 9 8 8 8 8 8 9 12 14 11 12 10 8 8 8 8 8 8 10 6 6 6 6 11 12 25 17 8 8 8 8 8 8 8 13 10 8 6 6 8 8 10 8 10 10 12 11 9 19 10 9 9 12 12 9 10 10 10 10 11 8 8 8 8 7 8 8 8 8 10 8 7 7 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no396_h18.g1 MSMg01no396_h18.g1 CHROMAT_FILE:
MSMg01no396_h18.g1 PHD_FILE: MSMg01no396_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:37 2005
         (469 letters)



>mm_chr14_65844316_65845184
          Length = 869

 Score =  891 bits (461), Expect = 0.0
 Identities = 468/471 (99%), Gaps = 2/471 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgtttcatttgtaccagttacactaaaaaaatctattctaggattatcaacaactttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtttcatttgtaccagttacactaaaaaaatctattctaggattatcaacaactttt 260

                                                                       
Query: 61  gagaaatataactataaaatgcttcaaatctcttaagacacactaattaaataaaaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaaatataactataaaatgcttcaaatctcttaagacacactaattaaataaaaggaa 320

                                                                       
Query: 121 ttctttaaggaaaaacaaacaaacaaaaaaatacccaagtacctgagaaattatcaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctttaaggaaaaacaaacaaacaaaaaaatacccaagtacctgagaaattatcaacat 380

                                                                       
Query: 181 gacacctgctccagaagtaaatgtcactgctttaaaagatatttttacaattatgtgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacacctgctccagaagtaaatgtcactgctttaaaagatatttttacaattatgtgcat 440

                                                                       
Query: 241 ttctcatagagggcagaggagtcagatttccctgaagggcaagtgtgggtgctggaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctcatagagggcagaggagtcagatttccctgaagggcaagtgtgggtgctggaaact 500

                                                                       
Query: 301 gaactaaggccttccacaagaaaagtacacactcttaacaactaattcactctttttcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaactaaggccttccacaagaaaagtacacactcttaacaactaattcactctttttcaa 560

                                                                       
Query: 361 ttgtaaaataagcatgactgagtaaatttaggtttaaatattctttttttttta--aatt 418
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 561 ttgtaaaataagcatgactgagtaaatttaggtttaaatattctttttttttttttaatt 620

                                                              
Query: 419 tttggagacagtatgccatatatctcatcccagccttgaactctatacagt 469
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttggagacagtatgccatatatctcatcccagccttgaactctatacagt 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information