BAC Information

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BAC

Clone NameMSMg01-396J13
Chromosome14 (Build37)
Map Location 70,784,172 - 70,784,416
singlet/doubletsinglet
Overlap genePiwil2
Upstream geneNkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450
Downstream genePolr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396J13.T7 (MSMg01no396_j13.b1)MSMg01-396J13.TJ (MSMg01no396_j13.g1)
ACCAG497136AG497137
length1,575800
length of high quality
(start - end)
---246 (65 - 310)
definitionCHROMAT_FILE: MSMg01no396_j13.b1 PHD_FILE: MSMg01no396_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:46 2005CHROMAT_FILE: MSMg01no396_j13.g1 PHD_FILE: MSMg01no396_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGCGCGCGCCCGTTCCCNTCCTGTNTNTATTTTTCCGCATCCTCTCTTCG
CGCTGGCCGCCAGCCCAGCCGGTGGNGCTCGTCCTGCCCCCGCCGCAGTT
CTGCGTCACCCTCTATTTCCACGNTTTTCCGGCCGTGCGGTGTTGTGACG
CGCGCGCGCGCTGTCGTACTCCTACGTAATCAGCTGACATATCGTATATA
TGATATTTTACGCGGATAATAATACATAGTAATGTATTATATCTATGTTC
TATCTCTTCCTACCCCTTAACACCTAACAGCCAACATCACTCTATATTTG
TATCACACAACANTACAGGAGGACCGGCCATGTATATGCTACAACCGCAG
CAGCGCTAGCCACTTGTGTGCTGCATTCGCTGATGCCTAGCCTCGCGACG
CGACGCCTCGCGNCTCTCGCGTCCTTGTTATTTAGTGTTAGTTCGATTCC
CGCTGTGTGTGTTATGATGCGGCGCGCGGCCCGGGACGGACGCCCAGCGC
GTGAGATGTATACGTTGTGAAGGAATGACAGGTCATCGCACCACACGCGC
CCACTCTTGATGTTATATTGATATTCAATTATTACACAATATCTACGTGA
ACGAAAGAGCATACTGTCATNAGTAGTCTAACAAAGATAATAGTAATCAC
ATATAANAATGAGATCCTATCAGCGACGACCACCCACTAATATGTTGATG
AAGTGAAGCAGCGTAATGCTTGTGCACGAAGACAGTATACGTATCAATGA
TGTTATAGCTATAGTTGATGACGACGTATGTTCTTACCGAGAGTGTGCAC
GACTAGCTACGCACGAGATACCGATAAGAACGAGAGACGGANGGNGCATG
TCGCGAGTATTACACACTATATATACTATGCACGCACGTGTGCATCTTGA
TAATATATCTGATGTCACGTTCGCGCAGTGTAGACGCAAACGATTGCGGC
GCTAGGCGCGGTNATACGACTATATTAGACGCGACTANAAGCCGTGTATA
ATNTATCACACGCCACGCAGAGACACCATAACACATTGACGGGGTATACA
TACGTGTATATATATAGACCATCACGCGTTGTGCGCGAGTAGTGATGTAT
GTATTGTATCTATATCGACTCCGCATCTCTCTCTGACTNACGTGGTATAT
ATACGACTGACCGAGACCGCAGTACTTATGTGGTATCATATATGTGTGTT
GCCGNCACTCTTGGGCTATAGTTGCACGGAGTATTGGCGCATGTTAGTAA
TTATTCGAGGACATATNTCGATGTGATCTGTAGTTACACGGCGACTTTGA
GTGATACGCTCTCATGCAGCGTCCGTGTGGCANATATTGTCGACACGAGT
GTGCGCATATGAGCACTGGCACGTCACAGCGCGCGCGGCGCATCTCTATT
GCGAAAGGGTACGTCAGACAATGATTGAAATCTAATGACATCTCACGTAC
ATATCAATCTGTGCGCGCACATAATATCTAGNACATCATATATCATTATA
GTNACTACGTGTCGTGAGCTACTAATAGTGTGAGCAGTCTATATCTCTCA
GCTGCGCGATAGTTATACTTGTAGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATACATATAAAATAAAATTTAAGATATGTTTAGAAA
GATAGAAAATCATGGCTTGGATGTGGTTTGGGTGCCTCCTGCTTCAGATA
TTAAAATCAGAGTTCCACTGTGAGCCTCTGATTGGCTGGAACTCTAACCT
GACTATGGTGAATGAAAGTGTGGCCTTGAATCCCAGCAGCTGGTATCAGA
GGAAGGCAGAGCTCTATGACTTCAAGGCTAACCTGGCCTATTCAGTGCAT
TCTGGGCCATTAGTGTTTCAAGAGTAATAGCCTGTCTCTGTCTCTGTATC
TCTCCCTCTCTTCATATATATATGGAGTGTGTGTGTGTGTGCATTTATAC
CTCCCCCCACCCCCGTCTTTCATCTGTTCTCTTTTTCCCACGTTTTTCTT
TTGATCCTCTATATTTAACCTCTTTGTTTCCCCTTTTTTTCCGCCTTTTT
TTTTTCCCCTTTTTCTTTTTCCTTTCCCCCTCTTAATCTTTTCCTTTTTT
CCCTTTATTCCCCTCTTTTCCTCCCCTTTATCTTCTTCTTCCCCCTCTTT
TTCCCTTTTCCCTCTCCTTTCTTTTTTCCTCTTTTCTTTTCCCTTTTTCC
TTCCTTTTTTTCCCCCCCTTTTCCCTTATCCTTCCCTTTATTTTCCTTCC
CTTTTTTTCTTTCCTTTCCTTTTTTCCCTTTTTTTTCCTTTCTCTTTATT
ACTCTCCTCATTCTCTTTTTCTCTCTCTTTTTTTTTTCTCTTTCTTTTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_j13.g1 MSMg01no396_j13.g1 CHROMAT_FILE:
MSMg01no396_j13.g1 PHD_FILE: MSMg01no396_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:46 2005
         (246 letters)



>mm_chr14_70784059_70784704
          Length = 646

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacatataaaataaaatttaagatatgtttagaaagatagaaaatcatggcttggatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atacatataaaataaaatttaagatatgtttagaaagatagaaaatcatggcttggatgt 299

                                                                       
Query: 61  ggtttgggtgcctcctgcttcagatattaaaatcagagttccactgtgagcctctgattg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 298 ggtttgggtgcctcctgcttcagatattaaaatcagagttctactgtgagcctctgattg 239

                                                                       
Query: 121 gctggaactctaacctgactatggtgaatgaaagtgtggccttgaatcccagcagctggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 238 gctggaactctaacctgactatggtgaatgaaagtgtggccttgaatcccagcagctggg 179

                                                                       
Query: 181 atcagaggaaggcagagctctatgacttcaaggctaacctggcctattcagtgcattctg 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 agcagaggaaggcagagctctatgacttcaaggctaacctggcctattcagtgcattctg 119

                
Query: 241 ggcca 245
           |||||
Sbjct: 118 ggcca 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)