BAC Information

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BAC

Clone NameMSMg01-396M14
Chromosome14 (Build37)
Map Location 71,445,653 - 71,445,895
singlet/doubletsinglet
Overlap genenone
Upstream gene1700081D17Rik, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2
Downstream geneLOC100043132, LOC100043136, LOC668477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396M14.T7 (MSMg01no396_m14.b1)MSMg01-396M14.TJ (MSMg01no396_m14.g1)
ACCAG497279AG497280
length774761
length of high quality
(start - end)
54 (243 - 296)245 (64 - 308)
definitionCHROMAT_FILE: MSMg01no396_m14.b1 PHD_FILE: MSMg01no396_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:00 2005CHROMAT_FILE: MSMg01no396_m14.g1 PHD_FILE: MSMg01no396_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTAAAGAAGACTACTTTCTCAGCAGCGCGGAANNCNCNTTGTTGC
AACCACGGGCATGAAGNTAGGGCNAACGCCTATAGTCTACTTCAGACTCT
GTGTCCGAGCTGGGTCAGCCAGAGTAGCACATGGGATCCAATTGTGCTGA
GGAGCTAGGGGTAGTACCAACTAGAGGTTGAAGGCACCAGCCTCCATCCA
GTGGCATAAGGTGCTGCTGCTGACTGAGGGGTGCATGAAAGTCCATTGTG
GGGCTCTGGCTCCCCATACCCCTATGCTTCTTGACTTCTGAAGGAAGTTG
CTGTTTTATTGCACTTCCTGGNCTAATGGGCTGCAAACTCAGAAGCTATA
GAAGTCTAAACAAGTATATTAACATGTAGGTACCAATCCTGGCCGTACCA
CCCGGGTGGACCTGGTGGATTGCGTGCCACCTGAACTTGTTCAGGAACAA
ATCGCTCCACAACTTGGTGTCTTCCTAATGAAGTACATGTGCAGACAGAG
CCCGTTTTCCTCTCTTCTAGACCCTGAAGTTATCTCCCCTGGTCCATGCC
TTCCGTACCTCCTCTAGTCTCCCAATCTGTTTTCTGATAACCTACCCCCC
TCCCTGATTCATCCCCGTCTAACTGCTGGCAAAAAGAACCCTCTTTTTTT
CTTGTTGTGCAATTTACTCCCACCCCCCCACCGGTCCACCACCTCCTCTC
TTTATTCCCCCCCCTACCCACCCCTCTCCTGACCTCCCACTCTTCACTCC
TACCCTCCCTTCTCTTCAATTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTATATCAAGCCACCCTGAGGAGAGGACCAGATAGC
AGGCACTGCCCCCTTAAGTAAATGAGGGCACTGAGACTGTGGTGAATAAG
ATGTGCCCAAATCACTGAATTTGTTAGCAAGATTCTGACTATTCAAGAGT
TCTTTTATCTTGTCTCTGTTTCCACAAATCCAGACCACCTTTACAACCAC
AACCCACTCTTTCAAACAACTTCAGTCTGCAATGTCCCCTTTGAGAGTGA
CTCTTATCTTATATCTCTGCTCTTGGTTTATCCTATGGGTAATGGGCTAT
CTTGCTCCAGACTGTTAGTAAAGAGCCCAGAAACTATGTCTTCTCCTTTT
CTTGGCCTAGATACAAATGATCTGCTTATAAAATACTTGAAGAATCAATT
CAGAGATTACTTAGCCATGTAGCTTTGGAGGGCTCTGCAGAAGTCAGACC
TACCAGTGTCAACAGTAGGGTGATAAGGGAGGAAGTTTCTCTCTACTCCT
CAACTTTTAACTCTTTTGCCATGTCTAATCCTGGTTTTGTTGTGCCAGGC
CTTGCATACAATGGACCCTAATTAATTCAAAACCCCCCCTCCTATTTTGT
TCCTTCTTCGTGCTCGAGTTTTTCCCCCTTACATCCGTTTTCCTTTTCAT
AAAAGCCCCTTATCCCTTTACTCCCTTTCTCCCGCCTTCCTTCTCTTCTC
TTTATTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_m14.g1 MSMg01no396_m14.g1 CHROMAT_FILE:
MSMg01no396_m14.g1 PHD_FILE: MSMg01no396_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:00 2005
         (245 letters)



>mm_chr14_71445453_71446097
          Length = 645

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatatcaagccaccctgaggagaggaccagatagcaggcactgcccccttaagtaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 actatatcaagccaccctgaggagaggaccagatagcaggcactgcccccttaagtaaat 384

                                                                       
Query: 61  gagggcactgagactgtggtgaataagatgtgcccaaatcactgaatttgttagcaagat 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gagggcactgagactgtggtaaataagatgtgcccaaatcactgaatttgttagcaagat 324

                                                                       
Query: 121 tctgactattcaagagttcttttatcttgtctctgtttccacaaatccagaccaccttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tctgactattcaagagttcttttatcttgtctctgtttccacaaatccagaccaccttta 264

                                                                       
Query: 181 caaccacaacccactctttcaaacaacttcagtctgcaatgtcccctttgagagtgactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caaccacaacccactctttcaaacaacttcagtctgcaatgtcccctttgagagtgactc 204

              
Query: 241 tta 243
           |||
Sbjct: 203 tta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)