BAC Information

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BAC

Clone NameMSMg01-397B10
Chromosome14 (Build37)
Map Location 78,943,909 - 78,944,275
singlet/doubletsinglet
Overlap genenone
Upstream geneD230005D02Rik, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11
Downstream geneDgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397B10.T7 (MSMg01no397_b10.b1)MSMg01-397B10.TJ (MSMg01no397_b10.g1)
ACCAG497510AG497511
length784823
length of high quality
(start - end)
373 (45 - 417)248 (72 - 319)
definitionCHROMAT_FILE: MSMg01no397_b10.b1 PHD_FILE: MSMg01no397_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:23 2005CHROMAT_FILE: MSMg01no397_b10.g1 PHD_FILE: MSMg01no397_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCTTCTTCCTGGAACGTTAAAACCTATTAAACTATACTAGACAG
GTATAGCCTGACTCTACACTCTGTCTGTTCTCTGCTTGTTATAGAGTCTT
TGGGGACATCTTGAATAAACATGGCCGATTCCCCATGATGGCACTTATGA
AAGCCTGTTCTATAGCCAGTCCTTTATGAACATGAAAGTAGATACCATCA
CTGGCCTGCACCATTCCACGGTGAGTCTAAGCTCCTGCGTCTGAAGGATG
CAGCTATCAAAAAAGAAGTGCATGAACAGCAGCGTGGTACTGAGAACAAA
AGAGGCACAGACCCTCCTAGTCTCGGCTAGTCACACCTCACAGTAATCAA
GTGAGTTAGTATCACAGGTGAGGCTGCTAGGAAACACGTTAGGTACACAC
TTCAACCTGGTTTTGTTTAACACATAGAATGGAAGACCTGCGTAGATTAT
AGAAACTGAGGCTGAACAGCTACTGTGCTAGACATGTTCCAAAGTTCCTC
TTCCTCCTCTAGGAGAAAAAAAAACATTTTTTTGTCTCCTCTTTATGAAA
AAAAAAATATGACCTTTCTTTTATCGAATTGTGGGAACCCAGTTTATCCC
CCAACCTCCAAAATAATTGCCTGTCCCCCCTCTTCCCTTTGCGTATATTT
TATAAACGTCTGTTCCCTCACTTTCCATTCATATGGTGTCCTTTTTATTT
TTTCTATAAACCAAATGTTTGTCTCCGTCTTCTN
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTTCCCCATTTTTTAA
TAGGATTATTTGGTTCTCTGGAGTTCTTCTTGAGTTCTTTCTATAGATTG
GATATTAGCCTTTGATAGGATATAGGATTGGTAAAGATATTTTCCCAATC
TGTTGGTTGCCCTTTTGTCCCTTTGCCATACAAAAGGTCTGCAATTTTTT
GAGGTCCCATTTGCTGATTTTTGATATTAGTTATCTGCAGACACCAAACC
CAGACACTATTGCTGATGTCTTTATGCACTTGCTGACAGGAGTCTGGTAT
GGCTGTCCCCTGAGAGGCTCTGCCAACGCCTGACCATTACAGATGCTGAG
CCTATACTCACCCCCCCCCCTCCAACTGAGCGTGAGGATACCATGTGAAA
GAGTTAGGGTCAAGGACTGTACCGAGTTTGATTGTGTTCCGCCTCCCCTT
TGTTTATCAACCTTCTTTTCTTAATTGGTCCCCACCCCCCGCTCTCTCCA
TACTTATTCCTCCCTTTCCCACCCCGATATCTTTTATTTTTTTTCCGGCG
CCTCCTCTACCCCTCTTTCTTCCCCTCTCCCCCTCCTTTTTTTTCCTTTC
TTCTTACTACCCTCCCTCTCCCCCCCCTCCTTTTTTCTTCTCCTCTTTCC
CCCTAATCAATACCCGCCACCTCTAAACTTTTTTTTTTTTTCTCTTACTC
TCATTCCCCTTGTCTCCTTCTTTTTTGTGCCCTACCTTATTCTTTTCCCT
CCCCTTCTCTTCCCCCCTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_b10.b1 MSMg01no397_b10.b1 CHROMAT_FILE:
MSMg01no397_b10.b1 PHD_FILE: MSMg01no397_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:23 2005
         (373 letters)



>mm_chr14_78943706_78944478
          Length = 773

 Score =  679 bits (351), Expect = 0.0
 Identities = 363/367 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctcttcttcctggaacgttaaaacctattaaactatactagacaggtatagc 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctcttctacttggaacgttaaaacctattaaactatactagacaggtatagc 263

                                                                       
Query: 64  ctgactctacactctgtctgttctctgcttgttatagagtctttggggacatcttgaata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgactctacactctgtctgttctctgcttgttatagagtctttggggacatcttgaata 323

                                                                       
Query: 124 aacatggccgattccccatgatggcacttatgaaagcctgttctatagccagtcctttat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacatggccgattccccatgatggcacttatgaaagcctgttctatagccagtcctttat 383

                                                                       
Query: 184 gaacatgaaagtagataccatcactggcctgcaccattccacggtgagtctaagctcctg 243
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaacatgaaagtagatatcatcactggcctgcaccattccacggtgagtctaagctcctg 443

                                                                       
Query: 244 cgtctgaaggatgcagctatcaaaaaagaagtgcatgaacagcagcgtggtactgagaac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgtctgaaggatgcagctatcaaaaaagaagtgcatgaacagcagcgtggtactgagaac 503

                                                                       
Query: 304 aaaagaggcacagaccctcctagtctcggctagtcacacctcacagtaatcaagtgagtt 363
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 504 aaaagaggcacagaccctcctagtctgggctagtcacacctcacagtaatcaagtgagtt 563

                  
Query: 364 agtatca 370
           |||||||
Sbjct: 564 agtatca 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)