BAC Information

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BAC

Clone NameMSMg01-397E05
Chromosome14 (Build37)
Map Location 22,901,773 - 22,902,089
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneAdk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, EG665075
Downstream geneEG435392, LOC665068
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397E05.T7 (MSMg01no397_e05.b1)MSMg01-397E05.TJ (MSMg01no397_e05.g1)
ACCAG497644AG497645
length768774
length of high quality
(start - end)
---317 (75 - 391)
definitionCHROMAT_FILE: MSMg01no397_e05.b1 PHD_FILE: MSMg01no397_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:38 2005CHROMAT_FILE: MSMg01no397_e05.g1 PHD_FILE: MSMg01no397_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTGGAACNNNNNNNNNNNNNCCNNNNNNNNNCCCCCCACNAACNNNN
NNNCNNNNNNNNNNNNNCCCNCCCNANAANNNNCNNNCCCCNAAACAACC
CCCTTTTCCAAAAAANACCNCGNNAANCCCANTTTCCCCCAAACACANGN
NNNCCCAACCCNNAANCCCCGCCCACCCTAACCCACAAANNCGCCCCCCN
NNAAAAANNNNNNNCCCCCCTCCAAAAAAAAAAAGGGTGGGGGGGGCGGG
GGGGGGNNNNNNNNNNNNNNNNNNNNNNCNNNNAAANNNNNNNNNNNANN
NNAAAANNNNNNNAAANNNNNAAAAGGGGAGGGGGCGGGGGGGGGGGGGG
GGAATGACTATTTTTTGTTTTTTCGTTTTGTTTGGGGTTAAAACNNAAGA
GGCGGGGNAAGGGGGGGGGGGCGGGGGGGCGGGGGGGTGGGGGGGGGGGG
GGGGGGGGGGGANAAANTCNNNNNNNNNNNNNNNNNANNNNGAAAAAAAA
AAAAAGGGGGGGGGGGGCCCNNNNNANAAAAAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANANNNNNNN
NNANNNNNNNNNNNNNNNNNNNNANNNNNNNNANNNANNANANANTTAGG
GGGGGGGGGGGGGGGGGG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCTCAGGAGGGACAGATCTCAGTTC
CAGTACAGTGACATTCAGAGTTGTCGTAGCTGTAGCTTCAACCACAGTAG
CATTTCTTCTTTACCAGACACTCTCCTAAGCACTGTGAACATAGCATTGC
ATGTAACCTTAAACACGGCTCTGTACAGCACAGTCGCCTCCGCTTTCCAG
AAGAGAAAAGAGAAGCATCCCAGAAGAATGGAGCCAGATTCTGTCTCCTG
CAGTTTGACTTCTTCTCCACCCTCTTCTCAGTCTGCACACTCTGTCCCAA
GCCTACAGCTCACGCACAGACTGTGAGAGAGAGATCCCATGGTCATGTCG
AGGATAGCTCCCTGTTAGAAGTGAGGGGAGCTGTGAGCATGGCCCATCAT
GATTTGACACTTATCATCTCTTTATTTTATGAGCTCTGCCCTCCCTTGTT
TCCCCTCCATAATTCTTCCTATTCTCTCTCGTCCTTTCTCCTCACTTTTT
ATCATCATTTCATTTTTTTCTTTTTGTCTTACTTCACTTCCCTCTCCTTC
TCCCTTTTTTAATCTTACACCCCCACCTTCCCCCTTTTTTTTTCCTTCCC
CTCATCCTCTCTTTTCCTCTTTTTTACACCCCAATCCCTTTTCCCTCCCT
CACTATTTCGATCTCCCCCCCCCCCCTATCATCATTTTTTTTCTCCCCGT
CCTACTTTTCTTTATATTCAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_e05.g1 MSMg01no397_e05.g1 CHROMAT_FILE:
MSMg01no397_e05.g1 PHD_FILE: MSMg01no397_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:38 2005
         (317 letters)



>mm_chr14_22901573_22902289
          Length = 717

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctcaggagggacagatctcagttccagtacagtgacattcagagttgtcgtagctgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgctcaggagggacagatctcagttccagtacagtgacattcagagttgtcgtagctgta 458

                                                                       
Query: 61  gcttcaaccacagtagcatttcttctttaccagacactctcctaagcactgtgaacatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gcttcaaccacagtagcatttcttctttaccagacactctcctaagcactgtgaacatag 398

                                                                       
Query: 121 cattgcatgtaaccttaaacacggctctgtacagcacagtcgcctccgctttccagaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cattgcatgtaaccttaaacacggctctgtacagcacagtcgcctccgctttccagaaga 338

                                                                       
Query: 181 gaaaagagaagcatcccagaagaatggagccagattctgtctcctgcagtttgacttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaaaagagaagcatcccagaagaatggagccagattctgtctcctgcagtttgacttctt 278

                                                                       
Query: 241 ctccaccctcttctcagtctgcacactctgtcccaagcctacagctcacgcacagactgt 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 277 ctccaccctcttctcagtctgcacactgtgtcccaagcctacagctcacgcacagactgt 218

                            
Query: 301 gagagagagatcccatg 317
           |||||||||||||||||
Sbjct: 217 gagagagagatcccatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)