BAC Information

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BAC

Clone NameMSMg01-397P23
Chromosome14 (Build37)
Map Location 50,336,152 - 50,336,512
singlet/doubletsinglet
Overlap gene3632451O06Rik
Upstream geneLOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
Downstream geneLOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397P23.T7 (MSMg01no397_p23.b1)MSMg01-397P23.TJ (MSMg01no397_p23.g1)
ACCAG498205AG498206
length786772
length of high quality
(start - end)
375 (70 - 444)361 (74 - 434)
definitionCHROMAT_FILE: MSMg01no397_p23.b1 PHD_FILE: MSMg01no397_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:36 2005CHROMAT_FILE: MSMg01no397_p23.g1 PHD_FILE: MSMg01no397_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATT
CTCTGTTTATCTCTGAGCCCCATTTTTTTTAAATTAGCTATTTTCCACAT
TTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCACCCCCACCCATC
CACTCCCACTTTTTGGCCCTGGCCTTCCCCTGTACTGGGGCATATAAAGT
TTGCAAGTCCAATGGGCCTTTCTTTCCAGAGATGGCCGGCTAGGCCATCT
TTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGATACTGGTTAGTTC
ATAATGTTGTTCCACCTATATTTTTGCAGATCCCTTTAGCTCCTTGGGTA
TTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGGTAAC
TGTGAGCATCAATTTATGTGTTTGCTAGGCTCCGGCATAGTCTCACTAGA
GACAGCTATATCAGGGTCCTATCAGCAAAATCTTGCTAGTGTATGCAATT
GTGTCAGCGTTTGGAGGCTGATTAATGGATGGATCCCCGGAAATGGCAAT
TTTTAAAGGGGGTTATTTGAATTTCTTGAGGCCCCCTTCCTCGAGTCCTT
TATAAAAATTTGAAAATAAACCCCCCACCCCAATTTAGGGGACGGAAAAA
CACTTTTCCTATTCTTTTGGTGACCCTTTTATTTTTAATAATTATGGCCT
TCCCCTCAGAAAAATATTTTTAATTTTTCCAATGCCCCTTTTTCTTCCTT
TTTTATATACATTCCCACATATTCTCTTTCTTTTCG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTTCTTGCTCAATGTTGTCATTTC
CTGCATGATTTTTTCTGCTCTCCCTTCTCCATCTTATATGTCACATGCCA
CACAAACTTCACCTCTTGCATGGCTTCTCGCATTCTCTGTATGCATGCTT
TTCTTTCTTTCTGTTCTACTTATTTCTAGCATTTTCCTTGTGTTATTTTT
GAATTGTCGTTCCCTTCGAATACTGTGCCCTGCTATTAGAAAAAGTGCTA
AATTCTCCCCTGAAGCAGACAGGTATAAAGTGCTGGCTTTCAAGGTGAAC
CCTGAGTCACATGAAGGACAGGAAGCAACTATTGGTCAGTACATCAGGGT
GACCATCATCACCACACAGAGCCCGCTTTCCTTTTAGACATCCTCCTGGA
AACTGCGTTCCAGTAACCTCCTTGGAAACCACGCCCTCATGAAAAAGACA
AACATGTAATGCTGGCTCATCCGTCAATAAAAACATCACCCCCCCTTGAT
GAAGGGGAAGTTTTCTTTAAAGGAAAAAAGGGAAACTATACAAATTTCCC
ATAATTGTTCCCCCGCGGCAAAATCAATAAATAGATTTCCTTTTTAAAAA
AAACCCTAAATCCCTTTTCATATTCCCCAACACAAATCAATACGTTTCTC
CACTCTCTTCTTTTTCGACTTTGTACCATAATATTAACTCTTCTTTTCGT
ATACTTAGCTCCCCTTACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_p23.g1 MSMg01no397_p23.g1 CHROMAT_FILE:
MSMg01no397_p23.g1 PHD_FILE: MSMg01no397_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:36 2005
         (361 letters)



>mm_chr14_50335952_50336712
          Length = 761

 Score =  690 bits (357), Expect = 0.0
 Identities = 360/361 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcttcttgctcaatgttgtcatttcctgcatgattttttctgctctcccttctccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcttcttgctcaatgttgtcatttcctgcatgattttttctgctctcccttctccatc 502

                                                                       
Query: 61  ttatatgtcacatgccacacaaacttcacctcttgcatggcttctcgcattctctgtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatatgtcacatgccacacaaacttcacctcttgcatggcttctcgcattctctgtatg 442

                                                                       
Query: 121 catgcttttctttctttctgttctacttatttctagcattttccttgtgttatttttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgcttttctttctttctgttctacttatttctagcattttccttgtgttatttttgaa 382

                                                                       
Query: 181 ttgtcgttcccttcgaatactgtgccctgctattagaaaaagtgctaaattctcccctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtcgttcccttcgaatactgtgccctgctattagaaaaagtgctaaattctcccctga 322

                                                                       
Query: 241 agcagacaggtataaagtgctggctttcaaggtgaaccctgagtcacatgaaggacagga 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagacaggcataaagtgctggctttcaaggtgaaccctgagtcacatgaaggacagga 262

                                                                       
Query: 301 agcaactattggtcagtacatcagggtgaccatcatcaccacacagagcccgctttcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaactattggtcagtacatcagggtgaccatcatcaccacacagagcccgctttcctt 202

            
Query: 361 t 361
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)