BAC Information

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BAC

Clone NameMSMg01-398I12
Chromosome14 (Build37)
Map Location 68,351,432 - 68,351,671
singlet/doubletsinglet
Overlap geneKctd9
Upstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2
Downstream geneGnrh1, Dock5, Nefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398I12.T7 (MSMg01no398_i12.b1)MSMg01-398I12.TJ (MSMg01no398_i12.g1)
ACCAG498611AG498612
length754864
length of high quality
(start - end)
239 (72 - 310)---
definitionCHROMAT_FILE: MSMg01no398_i12.b1 PHD_FILE: MSMg01no398_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:17 2005CHROMAT_FILE: MSMg01no398_i12.g1 PHD_FILE: MSMg01no398_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGAGAACACCGCGGAATTC
CCATCATCCCAGAAACATTCCCAATATCCCGAAAGGAATTTGTTCGATTT
CTGCTGGCCACTCCAACCAAGTCAGAGCTGCGCTGCCAGGTAACTGAAGC
AGACCGTTCGCTGCATGGCCTGTGTGCATCCGCAAATCTAGAGCAGTGCC
ACTTCCTTCGAGGGCTTTTGTTTTGCCTTATTTCTCTTTGTTTAATGTAA
GATACAATTTAATTATAAGCCAAGGCTTTGATTGAATTTAAAGTGGCTAG
TGCACATGAGATGTTTTAGCCTTTTTTACTGTCTAATTGTGCTTTATGTA
GCGGTTCTTGAGTAACATATGGAAATTACAGCAGTTTCTTTAAAAAGTTT
ATGTTCTCATATGTGTGTGGCTGGTCAGTGGCAGAAACTTTTGTGTGTTA
TCACAGGTTTTGAGAACACCACAATATTTATCTTTTTTCCCCTTAATTAA
GATGATTGGATTTTAGAATTAATAAAATAATAGCTATGCAATTGATCATG
GCTATTATCATGCATGTGACTAACTGTGATCCCTCTTTAAGCAGCTCACC
TGTCAGTGTAGCGTAGCCATCTCTGTCTTATTATATAGAGGCGCCATTTC
CTTTATGAGAACCCATGACAGTCTCGGACGTCGTGCACTTCCCGTTCCCT
TTGTTTAAGCTGATATTCATTCCTTTTTATGCGCACGTCCCTGTTTTCCG
ATAC
ATAAACCGCCAACCCCCGGNGGNCGCCCGGTTGCACCACCCCGGNGANAN
NANAGAATTTTTCGNACACCACCAAGAAGNGNCCACAAACGGCCGCTAAG
GGGACAGGAGATCATGCCCCAGCAATAGAAGGGAAGGCTGCATTGCTATT
TTATGTTTTTATCCTGGCGCGCACGCATGTATGTTTCCATGCGTGCATGC
GGACACAACAGGTCAACTTGTTCTCTCTCTGTCCCCCATGCGCCTCCTCT
TTACAAAACTCATGTAATCAGGCTTGATGCTAAGCATGTTTACCCTCTGA
GCCCCACAACGCCTTTTTTTTTCTTCCGAGCACCCCCCAAAGGCTGGACG
CCCACCCTCGTTTTTACTTCTCACCCCCGATCTATTTGAATACTCCCTGC
TCTCATTAATGGCACTCTCGCCCCCCCCTTGACACCCACCCGCATTCTCC
CTCCCGCCCTGCATTAGCCACACTCCCACTCCCCTGCTCCGCACCCCTCT
GCCCCCCCACCTCCCCCCCTACGCTTTTTATCTCCTCTTCTCTTGCTCAC
CTCTTTTCTCCCCTTCTCCCCCCTCCTCCCCCTTTCTCCCCTCCACCCTC
CTCTCTCTTCCCTTTTACAACACCCACCCTCTCCCCTCTCTATCCTCCTT
TCCATCACTCCTCTTCCACGCTAATGTTTTCCCGCCACCACCATTCTCCC
TCCTCTACATTATATCCTTCTTCTCCCTCTTACACCTTCCCTCTTCCCCT
CCTCATCGTATCCTTATCATATATCTCATCTACCTCCTCTTATCACTCTC
CTCTCTCTTCACCCTCCTCTCTCTCCCATCTACCTTTTCTCATCTCCTCT
AACAATATCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_i12.b1 MSMg01no398_i12.b1 CHROMAT_FILE:
MSMg01no398_i12.b1 PHD_FILE: MSMg01no398_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:17 2005
         (239 letters)



>mm_chr14_68351232_68351871
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%), Gaps = 1/240 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatatcccgaaaggaatttgttcgatttctgctggccactccaaccaagtcagagctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatatcccgaaaggaatttgttcgatttctgctggccactccaaccaagtcagagctgc 260

                                                                       
Query: 61  gctgccaggtaactgaagcagaccgttcgctgcatggcctgtgtgcatccgcaaatctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgccaggtaactgaagcagaccgttcgctgcatggcctgtgtgcatccgcaaatctag 320

                                                                       
Query: 121 agcagtgccacttccttcgagggctttt-gttttgccttatttctctttgtttaatgtaa 179
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 agcagtgccacttccttcgagggctttttgttttgccttatttctctttgtttaatgtaa 380

                                                                       
Query: 180 gatacaatttaattataagccaaggctttgattgaatttaaagtggctagtgcacatgag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatacaatttaattataagccaaggctttgattgaatttaaagtggctagtgcacatgag 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space:   145130
Effective search space used:   145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)