BAC Information

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BAC

Clone NameMSMg01-398P06
Chromosome14 (Build37)
Map Location 112,208,790 - 112,208,982
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622052, LOC100043491, LOC100043494, Slitrk5
Downstream geneLOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398P06.T7 (MSMg01no398_p06.b1)MSMg01-398P06.TJ (MSMg01no398_p06.g1)
ACCAG498935AG498936
length763732
length of high quality
(start - end)
244 (75 - 318)193 (124 - 316)
definitionCHROMAT_FILE: MSMg01no398_p06.b1 PHD_FILE: MSMg01no398_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:50 2005CHROMAT_FILE: MSMg01no398_p06.g1 PHD_FILE: MSMg01no398_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCGGTCCCCTACCGAATGGCTGAGAAGCACCTGAAAAAATGC
TCAGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATT
CCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGTTGG
TATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAG
AAAATCTGACATAGTATTACTTTTTGGATCCCACAATACCTCTCCTGGGC
ATATATCCAGAACATGTCCCAACCGGTAAGAGCAGTTGTTCTGACTTACC
CAAAAACCATATTCCGTAATGAGAGCATAGAATATATATTGCCCCTCTCT
ACACCACTACTATTGAAAGTTTACCGGCAACAGATTAATTAGCATATCTT
CATTCTAGATACTGCATTGTACTATTTTGTGCAGCCTCCTTCCCCTCCTT
AAATTTTTATTATATCACTCGATTATTTTTCAATTTTATTCTATTTCTCG
TATCCTCACTACAACTCTCTATTTTGGTCTCATTTCCTTTGACCTCCTCA
ATCCTCGCAGAATCTCTCCTATGCCCTGTTTCCTTTCCCTGATGTTACTT
CCCTGTTCCCCAGCCTTGCCACTTTGCTTCATTTTTTTTCTCATTATTCC
CACCCTCCCCTCC
CACGATGAAGTGGGAGGCCTGGNGGNCGCCTGTTTTCACACTTTAGGNGA
ACTANAGAAGTTTCCGCAACAATCTACGNGAGCCTTAGCTCTGATTTGAT
TTTTTCAATGGCAAATTTCTGCGTATTTCAACCTAAGTGACTTCAGTTAT
AAAAACACATTTGAATCAAATATATTCTATCGAGCTACATACACTATAAT
AACCAGGAAGTGATAGAAATGTTAACAAAAATTTACAAAGCACATATAAT
TGTCTTTCAAGGATAAATGTTAAACCTTTCACACTTTATTTTGTGTGATA
GTTATTAACCGCATTTGGCTACTTATTCACCTTTATATTGGAATAGGCTC
AATAGCGTCTACTTTAAAAATGAAAGTTGCCCTTAAATAATATCTAAGGG
GTGACTATTTATTTCACCCAAACACTTCCAGGGATTGACAATTTTTTATT
CTACTTTAATCTAAAAACATCATAAGTAGCGATCTTTATTAATATGGAAA
TTTAGCTTTGTAGACTTATAATAAGCTTTCAAATATTTGAAATCAGATTT
CTCCTCTTATGATTTTTTAAATAAAATGCCGACTTTCCTGAATTGATCTC
AGGCTTGAAGCTGTTTTACTATTCACAACTATAGGAGGAGCTATAATCTT
TTTTCTTAGCCTTACCCTGAGGCACAGAAGACATTGCCACAGCTTGATAT
TGGCAAGACCCATGGTTAAAGGCTTAATGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_p06.g1 MSMg01no398_p06.g1 CHROMAT_FILE:
MSMg01no398_p06.g1 PHD_FILE: MSMg01no398_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:50 2005
         (193 letters)



>mm_chr14_112208590_112209182
          Length = 593

 Score =  350 bits (181), Expect = e-101
 Identities = 190/193 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttcaacctaagtgacttcagttataaaaacacatttgaatcaaatatattctatcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tatttcaacctaagtgacttcagttataaaaacacatttgaatcaaatatattctatcga 334

                                                                       
Query: 61  gctacatacactataataaccaggaagtgatagaaatgttaacaaaaatttacaaagcac 120
           |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 333 gctacatacactataataacgaggaagagatagaaatgttaacaaaaatttacaaagcac 274

                                                                       
Query: 121 atataattgtctttcaaggataaatgttaaacctttcacactttattttgtgtgatagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atataattgtctttcaaggataaatgttaaacctttcacactttattttgtgtgatagtt 214

                        
Query: 181 attaaccgcattt 193
           ||||||| |||||
Sbjct: 213 attaaccacattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)