BAC Information

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BAC

Clone NameMSMg01-399D07
Chromosome14 (Build37)
Map Location 23,270,579 - 23,270,833
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, EG665075
Downstream geneEG435392, LOC665068, Kcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399D07.T7 (MSMg01no399_d07.b1)MSMg01-399D07.TJ (MSMg01no399_d07.g1)
ACCAG499124AG499125
length985783
length of high quality
(start - end)
---255 (76 - 330)
definitionCHROMAT_FILE: MSMg01no399_d07.b1 PHD_FILE: MSMg01no399_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:09 2005CHROMAT_FILE: MSMg01no399_d07.g1 PHD_FILE: MSMg01no399_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCTCCTTTATTCGCCAACAAATAATTTTTTATTAATATATNAATATAA
CCCGTGCTCCCTTTTCGTCCTTTTTTTCTGTTTTTTGGAGGATTTTTTCT
TAAAACAGGATTATGTTGTTGTTTTTTCCTCTCTCAACCCTTAGACGCCC
CGCGCCCCGCCCACGCCTCCAGTCGTTCATCGTCGCAATGGAGGGTGGGC
CGGCAAATATAAAACAGAAAATCTAATCGTCTATTTAGGCAGTAGACCCT
CTTTAGACCCAACCAACCACCAATACTTGTGCGGTTATATTCACCCCCCC
GCCCCCGCTTTTTTTCCCTCGCGCCCATTTTTTTTTTCTTTTTTTTTCGC
CTCCCTTTCCCCACCCTCCACCCACTTTTTCATCCTCCTTCTTTTAATAA
AGCACGCGAAGATTCGCACACCATAAACCCCTCTCCTATTTCGTTTCTTA
CTCCCATACGGAAAGGAGGGGGGGGAGCCTGGTGGCCGTTGTATCCCACC
GTTGGTATTCTTATCTAGCCACTCTCCCCCCCTACTTTTTTACGCCTGTC
GCTTGCATGTTTGCACTAGGGACGAGAATATTCGCTCTTACCTATATCGG
AACCGTTCCTTTAAGTCCCCCACTTTCACTCTCTTCTCTTTTTTCTCCCC
CTCCCCCGGGGGCGGCTACTAATAATCATCTTGCCGCCCGGCGATCCTTT
TTTTAGCCTCCATTCTCCCGCCNNNGNNNGCTGNNCTTTATGCGAGAAAC
TTCCCACNTTTNACCCGTTNCCCGCACCCCGTNTNCGGGTCCGNANNNAT
NNTTTCCTTTTCACTGAAGNGTTTNCCCNTNGNCAGTTCCGTTTATTATT
ATTGTNTTATTTCCTATCANNCCTTTGCTCTTTTGANAGATTGGCCCCTC
NCTGTTNAAGCAACCNTCTTATTTCNCAACTTGNGGTTTGGTTNGATTTA
TCACCTCCGCGATCCCTCATATTTAGTACTTTCAC
TCTCTCGATGATGCGGGTAGGTCTGTCGGCCGCCTGGTCCCAAAATTTAG
GTGATACTATAGAATTACCCGCGAAATTCTCCACACAGCTCGATTTCTTT
CTATAAATAATTTTAAAACTATTACCCAATAATATATTGTAATAAAAGAG
CTGATAGGCCCTTGCTCAACAAGTAATCCCCAGCGTGTTTTCGCACCTGG
AGATGGAGAACTTTCTTATTACGTGCCCCTGGTGATTTTTAGGTGTTTCT
ATAAAGCTGCACCATTATTTATAAGTCACGGGTTACTTCACTTCACTGGA
TGCTACGACTAATGAAAAGTTATTTTGAGGGCTCAGTATAAGACGTGTGG
ACTATAGTGTGCGCGTCAGGTATCACTTGTGTAGCGGAAGACATTTCTGT
AAGTTCTTTGTTTTCTGTCCCCACCTGCCCTAGGTGTCTTGATGCTAATG
CACAGGTAGTTCACATCTCTTTCTTATAGCTTGTCCGTTGCTGATCACCA
TCTCATATCTGCTCCTTTTTGTTCCGTCTTCTTCCCCTGTTCTCTTCACC
ATTATTCTCGCCTTCCCCGGTATATCTCCCAGAGCCCTCTGTCGACCTCC
ATCTCGTTTATACACTATACATTTCTCGTATTATTTTCCCCTTGTCTCAT
TTCTTTTATTCTTTCTATGCTACTATCCTTTGGTTACTACTTCCCTCTTT
TTCTATTTTTGTTACTTCCCTATCCTACACTTACTAATCTCTACTCCTTT
TCCTGCAATTTCCATTGTTCATCTTCTTACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_d07.g1 MSMg01no399_d07.g1 CHROMAT_FILE:
MSMg01no399_d07.g1 PHD_FILE: MSMg01no399_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:10 2005
         (255 letters)



>mm_chr14_23270379_23271033
          Length = 655

 Score =  470 bits (243), Expect = e-137
 Identities = 252/255 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctccacacagctcgatttctttctataaataattttaaaactattacccaataatat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 455 attctccacacagctcgatttctttctataaataattttaaaactattacccaataatgt 396

                                                                       
Query: 61  attgtaataaaagagctgataggcccttgctcaacaagtaatccccagcgtgttttcgca 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 attgtaataaaagagctgacaggcccttgctcaacaagtaatccccagcgtgttttcgca 336

                                                                       
Query: 121 cctggagatggagaactttcttattacgtgcccctggtgatttttaggtgtttctataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cctggagatggagaactttcttattacgtgcccctggtgatttttaggtgtttctataaa 276

                                                                       
Query: 181 gctgcaccattatttataagtcacgggttacttcacttcactggatgctacgactaatga 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gctgcgccattatttataagtcacgggttacttcacttcactggatgctacgactaatga 216

                          
Query: 241 aaagttattttgagg 255
           |||||||||||||||
Sbjct: 215 aaagttattttgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)