Query= MSMg01no399_j03.b1 MSMg01no399_j03.b1 CHROMAT_FILE:
MSMg01no399_j03.b1 PHD_FILE: MSMg01no399_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:37 2005
(500 letters)
>mm_chr14_100001403_100002302
Length = 900
Score = 886 bits (458), Expect = 0.0
Identities = 487/502 (97%), Gaps = 12/502 (2%)
Strand = Plus / Plus
Query: 5 gaattcttgctattca-ttatactgaccaagctgtttatgaaggacttttttttccctaa 63
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgctac-cacttatactgaccaagctgtttatgaaggacttttttttccctaa 263
Query: 64 agaaaaaaggaagatggaaggttgctactgtcatttgctgtctcagtgtgactgttgtgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaaaaaaggaagatggaaggttgctactgtcatttgctgtctcagtgtgactgttgtgg 323
Query: 124 attcattggcctattttttttttttttcatttgagtcctgtagatcaagagagtagtaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attcattggcctattttttttttttttcatttgagtcctgtagatcaagagagtagtaga 383
Query: 184 ctgtgctgggtaaggggcgggggtgggagtaagaagaaatggggagttaggcaggagcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgtgctgggtaaggggcgggggtgggagtaagaagaaatggggagttaggcaggagcct 443
Query: 244 ccctaaactgccctgcagacataggtcatagttagtaagaagaggtcagaagaacacgtc 303
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 ccctaaactgccctgcagacataggtcagagttagtaagaagaggtcagaagaacacgtc 503
Query: 304 tccagatttacccccttgcatatgagcaagaacattccaatgtcctacactatcaggaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccagatttacccccttgcatatgagcaagaacattccaatgtcctacactatcaggaaa 563
Query: 364 ataggcacccccac-----caagtcaactctaatgtcaccttattttcgatcactcagaa 418
||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ataggca-----attgtagcaagtcaactctaatgtcaccttattttcgatcactcagaa 618
Query: 419 aaactcactgaggtacaaatcaccaagcctgccactgagttttctctcagtcacatacct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaactcactgaggtacaaatcaccaagcctgccactgagttttctctcagtcacatacct 678
Query: 479 caaaggcaagaaacaagagaag 500
||||||||||||||||||||||
Sbjct: 679 caaaggcaagaaacaagagaag 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no399_j03.g1 MSMg01no399_j03.g1 CHROMAT_FILE:
MSMg01no399_j03.g1 PHD_FILE: MSMg01no399_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:37 2005
(338 letters)
>mm_chr14_100193505_100194242
Length = 738
Score = 646 bits (334), Expect = 0.0
Identities = 337/338 (99%)
Strand = Plus / Minus
Query: 1 atctgctgagacaccatttctccaggaccatcttttcatgatgctgcagtgcttctggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 atctgctgagacaccatttctccaggaccatcttttcatgatgctgcagtgcttctggga 479
Query: 61 gtccttttgaggatgaatgacctccacaaagcactcaaagagcatggtaactaaacacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtccttttgaggatgaatgacctccacaaagcactcaaagagcatggtaactaaacacca 419
Query: 121 atgtgtaagcagagtgacctggaagaaaaggcagcagggtcctaatctggaatagcaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atgtgtaagcagagtgacctggaagaaaaggcagcagggtcctaatctggaatagcaaag 359
Query: 181 agcagggacccactacagagaatccttctgacattggcttgtggtggtagcagccaagtc 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 358 agcagggacccactacagagaatccttctggcattggcttgtggtggtagcagccaagtc 299
Query: 241 ctaattaatggataatgctggagggctaattgcactgtgggcagcaggatccacaggtag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ctaattaatggataatgctggagggctaattgcactgtgggcagcaggatccacaggtag 239
Query: 301 gggctatacagcaaaggtagctgtataccttgtataca 338
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gggctatacagcaaaggtagctgtataccttgtataca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
