BAC Information

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BAC

Clone NameMSMg01-400B08
Chromosome14 (Build37)
Map Location 81,084,549 - 81,084,985
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh8, EG629734, Olfm4, LOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400B08.T7 (MSMg01no400_b08.b1)MSMg01-400B08.TJ (MSMg01no400_b08.g1)
ACCAG499790AG499791
length846796
length of high quality
(start - end)
45 (75 - 119)437 (74 - 510)
definitionCHROMAT_FILE: MSMg01no400_b08.b1 PHD_FILE: MSMg01no400_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:16 2005CHROMAT_FILE: MSMg01no400_b08.g1 PHD_FILE: MSMg01no400_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGCCCACCGCGGAATTC
ATGTGAACCCCCCCCCACTTTAACTGATCAAATAGAGGCTAGAGCCTGTG
ATTAGGCAGTGGAAGGGAAAGGTGGGGCTGGAGGTTTTTTAGAGAGGACG
AAGAGAAGAAGGACAGAGGGAGACGACCCCACGCCCCCCCCCCCCCACTA
CCCCCCCCCCCCCCCCCCCCCCTACCCACCTCCCCCCCCCCCCCCCGCTC
CCCTCTCCCCCCCCCCCCCCCCCCGCTCCCCCCCCCCCCCCCTCCCCCCG
CCCCCCGCCCTCCCCAACTCCCTTTCCCCCCCCCCCCCCCCCCCCCCCCG
CCCCCTCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCGCCCCCCCCCCCC
CCTCCCCTCCCCTCTCCCCCCCCCCCCCCCCCCCTCCCCCCTCCCCCCCT
TCCCCCCCCCCCCCCTCACCCCCCCCCCCCCCCCCTCAACCCCCCCCCCC
CCCCCCCCCCCTCCCCCCCTCATCCACCCCCCCTCTCCCCCCTCCCCCCC
CCCCCCCCCCCTCCCCCCTCCTCCACCCCTACCCCGCCCCCCCCCCCCCC
CCCCCCCCCCCCCCTCCCCCCCCCCCCCCCNCCNCCTCCTCCCTCTCCCC
CCCCCTCCCCCCCCTCCCCCCCCCCCCCCCCCTCCCTCCCCCTCCCCCCC
CCCCCCCCCTTCTCCCCCCCCCCTCGCCCTTTACCCCCTGCCCCCTCCCC
CCCCCCCCCTCCCCCTTCCCTCCCCCCCCCCCCCCCTCCTCCCTCCCTCT
ACCCTCCCCCCACCCCCTTCCTACCCCCCCCCTTCCTCCCCTCTCN
TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTAGTATTGTGTTGGCTCATGTTGA
TTGCCAACAAGATTGTATTAAGAAGCACTAAGTGGATTTCAAAAACACAC
TTTACTTATGTGTGTAACAGTCCGTGCCCATGAGAGGATTGACTAGAGTA
AGAACCACCCTGGATGTAGACAGCACTACCCCAAAGGTTGAGACCCAGAT
TCATAGAAGACCCAACAAAACAATGCCAGCTGGTGCAGTCATTGAGCCCC
TTGCTGCCAGACCACCAATATAGGAGCTTCTCCCTCTGCTATTCCCTCCC
TGGCATGGTAAACTGACACCCATGAGCCCAAATAAATCCTTCTCACTTGT
GTTATTCCTGACAAATATTTGGTGTAGCCACAGAGATGCTGATACAAGTA
CAAGGGACATCGTCCTCTTGGAAGATAAATAATCTCAGTTAGAAAAGTAA
AGGAACCTGGTGAGTGTGTGACTATCGGACATGTTCTCTTCTTTCCTGGC
CAGGAAAGAAAACAGCACTTTGCCCCGTTTTAGGAAAATATACCTAGTGT
TATTATATAATACCCCTTAGTGAACTCCCCTGTGAGGACAACTTTATTTC
CAAAGGGACCTGCCTGGAAACTTAAATGGAAGGGGTCCTTTTGTCGGGTT
GCCTAGAACCAAAACCCCCCCTCCACCGGGGCCTTGCTATAAATGCTCTC
CGCATTTTTTCTCTCCTTATTTGCGGTGGGGCGCGTAAATCGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_b08.g1 MSMg01no400_b08.g1 CHROMAT_FILE:
MSMg01no400_b08.g1 PHD_FILE: MSMg01no400_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:16 2005
         (437 letters)



>mm_chr14_81084349_81085185
          Length = 837

 Score =  830 bits (429), Expect = 0.0
 Identities = 435/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtagtattgtgttggctcatgttgattgccaacaagattgtattaagaagcactaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cagtagtattgtgttggctcatgttgattgccaacaagattgtattaagaagcactaagt 578

                                                                       
Query: 61  ggatttcaaaaacacactttacttatgtgtgtaacagtccgtgcccatgagaggattgac 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 577 ggatttcaaaaacacactttacttatgtgtgtaacagtcagtgcccatgagaggattgac 518

                                                                       
Query: 121 tagagtaagaaccaccctggatgtagacagcactaccccaaaggttgagacccagattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tagagtaagaaccaccctggatgtagacagcactaccccaaaggttgagacccagattca 458

                                                                       
Query: 181 tagaagacccaacaaaacaatgccagctggtgcagtcattgagccccttgctgccagacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tagaagacccaacaaaacaatgccagctggtgcagtcattgagccccttgctgccagacc 398

                                                                       
Query: 241 accaatataggagcttctccctctgctattccctccctggcatggtaaactgacacccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 accaatataggagcttctccctctgctattccctccctggcatggtaaactgacacccat 338

                                                                       
Query: 301 gagcccaaataaatccttctcacttgtgttattcctgacaaatatttggtgtagccacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gagcccaaataaatccttctcacttgtgttattcctgacaaatatttggtgtagccacag 278

                                                                       
Query: 361 agatgctgatacaagtacaagggacatcgtcctcttggaagataaataatctcagttaga 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 277 agatgctgatacaagtacaagggacatcgtcgtcttggaagataaataatctcagttaga 218

                            
Query: 421 aaagtaaaggaacctgg 437
           |||||||||||||||||
Sbjct: 217 aaagtaaaggaacctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)