Query= MSMg01no400_f05.b1 MSMg01no400_f05.b1 CHROMAT_FILE:
MSMg01no400_f05.b1 PHD_FILE: MSMg01no400_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:36 2005
(443 letters)
>mm_chr14_24216209_24217051
Length = 843
Score = 793 bits (410), Expect = 0.0
Identities = 435/446 (97%), Gaps = 10/446 (2%)
Strand = Plus / Plus
Query: 4 ggaattctgtaggggtatctgctttttttttgtttgtttgttttgttttgttttgtttt- 62
||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctgtagggg-a-cag-tttttttttgtttgtttgttttgttttgttttgttttg 258
Query: 63 ----ttgttttgttttgttttgttttttttcagccagaaatttacccacaaaaccatgga 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttttttgttttgttttgttttgttttttttcagccagaaatttacccacaaaaccatgga 318
Query: 119 tttctaactacatttaaaaatcttgcaggaaaccaggtattcattctaggaaagtctgtt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttctaactacatttaaaaatcttgcaggaaaccaggtattcattctaggaaagtctgtt 378
Query: 179 gtctcacaggatatgggttccgcaactggacaaatcccccactgctgtatatagtccctg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtctcacaggatatgggttccgcaactggacaaatcccccactgctgtatatagtccctg 438
Query: 239 gcttcacaaggcaggcagtcctcattagcctttgtttaagcacaatactcccaagatagg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gcttcacaaggcaggcagtcctcattagcctttgtttaagcacaatactcccaagatagg 498
Query: 299 gcaaattcttatggcatgctatgtctccaattgtcagttgatactgtgtggcaaggaggg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcaaattcttatggcatgctatgtctccaattgtcagttgatactgtgtggcaaggaggg 558
Query: 359 taggagctatgtaccaggattggaaagcaccctactggcttcaaacctacacattggagg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 taggagctatgtaccaggattggaaagcaccctactggcttcaaacctacacattggagg 618
Query: 419 cttaacaaaat-ccaattggctttcc 443
|||| |||||| ||||||||||||||
Sbjct: 619 ctta-caaaattccaattggctttcc 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_f05.g1 MSMg01no400_f05.g1 CHROMAT_FILE:
MSMg01no400_f05.g1 PHD_FILE: MSMg01no400_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:36 2005
(476 letters)
>mm_chr14_24409252_24410127
Length = 876
Score = 874 bits (452), Expect = 0.0
Identities = 470/476 (98%)
Strand = Plus / Minus
Query: 1 agtagtagatttcttcacagtccctcctgtgtttgtgtctgtgtacttaaacagaagttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agtagtagatttcttcacagtccctcctgtgtttgtgtctgtgtacttaaacagaagttg 617
Query: 61 gcttggtaagtcggtctcttttgccgtttcactggctcttcagcaggatagattaaagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gcttggtaagtcggtctcttttgccgtttcactggctcttcagcaggatagattaaagat 557
Query: 121 atatagggtccaggaaggactcttttgctggtctgtggctatgcataggcagttttgcgt 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atatagggtccaggaaggattcttttgctggtctgtggctatgcataggcagttttgcgt 497
Query: 181 gtggccatggatggtgttcttggggtgtcagaactggatggcgacagcccaggagaatct 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtggccatggatgatgttcttggggtgtcagaactggatggcgacagcccaggagaatct 437
Query: 241 gtggaggtagagctttagacggtatagtttcatcattgtttaagtcccgtggtcatcact 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtggaggcagagctttagacggtatagtttcatcattgtttaagtcccgtggtcatcact 377
Query: 301 gtcacagctgggacttctacagttcactcttctgtcacttgtcattcaggaattgagagt 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 376 gtcacagctgggacttctacagttcactcttatgtcacttgtcattcaggaattgagagt 317
Query: 361 caggactggttaaagaagcccatgggaatgagaccaaccgtcagagtggcaggatctcgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 caggactggttaaagaagcccatgggaatgagaccaaccgtcagagtggcaggatctcgt 257
Query: 421 gacccagaagttccacctgtcacacttgggctttatttatagttgcaatttctggg 476
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gccccagaagtcccacctgtcacacttgggctttatttatagttgcaatttctggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
