BAC Information

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BAC

Clone NameMSMg01-402B01
Chromosome14 (Build37)
Map Location 112,912,683 - 112,913,154
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402B01.T7 (MSMg01no402_b01.b1)MSMg01-402B01.TJ (MSMg01no402_b01.g1)
ACCAG501302AG501303
length759752
length of high quality
(start - end)
449 (44 - 492)564 (75 - 638)
definitionCHROMAT_FILE: MSMg01no402_b01.b1 PHD_FILE: MSMg01no402_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:50 2005CHROMAT_FILE: MSMg01no402_b01.g1 PHD_FILE: MSMg01no402_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGATTTTTTTCAATGACATTTCTTTTTTTTTTCTTCTTTTTTATGA
TTAGGTATTTTCCTCATTTACATTTTCAAATCTATCCCAAAGGTCCCCCA
TACCCACCCCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGG
CATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTC
TTTGCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAAAG
ACAAGAGCTCCCGGGTATTGGTTAGTTCATATTGTTGTTTCACCTATAGG
TTTGCAGTTCCCTTTAGATCCTTGGGTAATTTCTCTAGCTCCTCCATTGG
GGGCCATGTGACCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTT
TGCTAGGCCCCGGCATAGTCTCACAAGAGAGAGCTATATCTGGGTCCTAT
CAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCATTTGGAAGCTGAT
TATGAGATGGATCCCTGCATATGGCAATCACTAGATGGTCCATCCCTTTC
GTCACAGCTCCCAAATTTTGTCTCTGTAACTCCCTTCCATGGGTGTTTTG
TTCCCATTTCAAAGAAAAGGTTAATGTATCCCCCCCTTTGGCCTTCCCAT
GACATTTCCTTTAAAGAATCTCCTTTTCCTAATCTCTCCCAATAATTTCC
GATTTTTTN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACATGGCTTCTATCCTGGTTTTGTCA
CATCATATTTATTTTTGGCTTACATGGTCACAATTTTAATAATTATTAAT
TAACAAGGAAAATTTTATTGTCATGTGTGTGTATTTCCTTGCATGGATAT
AGATGCTTTGCTTATATCCCCACGTTCTTCATTTATGACATCTAAATACA
CACATCTAAACATCTACAAGATTGCCCACTCTTTCCCTACTTATTCAATA
TGCTACTTGAAGTCCTAGTCAGAGCAATAAGACAACAAAAGGAGATCAAG
GAGATACAAATTGGAAAGGAAGAATTCAAAATATCACTATTTGCAGATGA
TATGATAGTATAAATAAGTGGTCTAAAAAATTCCACCAGAGAACTCCTAA
ACCTGATAAACAACATCAATGAAGTAACTGGATATAAAATTAATTCTAAC
AAATCAGTGGCCTTTCTCTACACAAAGGATAAACAGGCTGAGAAAGAAAT
TAGGGAAGCAACATCTATCANAATAGTCACAAATAATATAAAATACCTTG
GTGTGACTCTAAGCAAGTGAAAGATCTATATGATAAGAATTTCAAGTTTC
TGAAGAATTAAATTGAAGAGCTCAGAAGATTGAAAGTTCTCCCATGCTCA
TGGATTGGCAGGAATAATATAGTAAAAATGCCTATCTTGCCTAAAGCAAT
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_b01.g1 MSMg01no402_b01.g1 CHROMAT_FILE:
MSMg01no402_b01.g1 PHD_FILE: MSMg01no402_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:50 2005
         (564 letters)



>mm_chr14_112912683_112913646
          Length = 964

 Score =  893 bits (462), Expect = 0.0
 Identities = 469/472 (99%), Gaps = 2/472 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatggcttctatcctggttttgtcacatcatatttatttttggcttacatggtcacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 acatggcttctatcctggttttgtcacatcatatttatttttggcttacatggtcacaat 413

                                                                       
Query: 61  tttaataat--tattaattaacaaggaaaattttattgtcatgtgtgtgtatttccttgc 118
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tttaataatcatattaattaacaaggaaaattttattgtcatgtgtgtgtatttccttgc 353

                                                                       
Query: 119 atggatatagatgctttgcttatatccccacgttcttcatttatgacatctaaatacaca 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 352 atggatatagatgctttgcttatatccccacgttcttcatttatgacatctaaatataca 293

                                                                       
Query: 179 catctaaacatctacaagattgcccactctttccctacttattcaatatgctacttgaag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 catctaaacatctacaagattgcccactctttccctacttattcaatatgctacttgaag 233

                                                                       
Query: 239 tcctagtcagagcaataagacaacaaaaggagatcaaggagatacaaattggaaaggaag 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tcctagtcagagcaataagacaacaaaaggagatcaaggagatacaaattggaaaggaag 173

                                                                       
Query: 299 aattcaaaatatcactatttgcagatgatatgatagtataaataagtggtctaaaaaatt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aattcaaaatatcactatttgcagatgatatgatagtataaataagtggtctaaaaaatt 113

                                                                       
Query: 359 ccaccagagaactcctaaacctgataaacaacatcaatgaagtaactggatataaaatta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ccaccagagaactcctaaacctgataaacaacatcaatgaagtaactggatataaaatta 53

                                                               
Query: 419 attctaacaaatcagtggcctttctctacacaaaggataaacaggctgagaa 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  attctaacaaatcagtggcctttctctacacaaaggataaacaggctgagaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)