BAC Information

Click to search

BAC

Clone NameMSMg01-402F01
Chromosome14 (Build37)
Map Location 99,424,522 - 99,586,840
singlet/doubletdoublet
Overlap gene2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e
Upstream geneDach1, LOC635593, LOC619716, LOC100043787
Downstream geneLOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402F01.T7 (MSMg01no402_f01.b1)MSMg01-402F01.TJ (MSMg01no402_f01.g1)
ACCAG501491AG501492
length753777
length of high quality
(start - end)
484 (43 - 526)351 (73 - 423)
definitionCHROMAT_FILE: MSMg01no402_f01.b1 PHD_FILE: MSMg01no402_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:10 2005CHROMAT_FILE: MSMg01no402_f01.g1 PHD_FILE: MSMg01no402_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,424,522 - 99,425,002)(99,586,490 - 99,586,840)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAAT
TCACAGAGATTTTCCTGCAATTGCTTCCCACGTGCTGGGGTTAAAGGCGT
GTGTAACATACCTGAAAAAAAAATATGTGTACACACACACACAGATATAT
ATATATATATATAAACATATTCTCCTACTCAGTCCAACTAATGTTGTCTG
GGGTTAAAACAAATTAATCTTGCCTTAAATTATAACAAGATTAAAGATTA
AAGTTTTCACTAGAGATGGCTTTGCTATGCAAAGCTGTGAGCTCTTCTCC
CCCGAGGGTATTTTATACTCTCTGGAGCTGTTTGCTGTTATTAGCCTTCT
CTTTTCTCTCCAGAACAGAAGGTTCAGGGTCTGTCACCCACATCAAGCCA
GCCACAGAGCTCTGCTGATTTTTCTCTAGCCTCATCTCATGTCTGCGTTC
TCTTTGTTCATTTCCATTTCTTTTCTTCCTGTTTATCTTTCCCCCCTGGA
ACTCTCCCTGACACTATCTTTCCCCTTTTGTCTGTCCTTTCCAGAGCTGC
CAAGACCTGATATTTTTTCCCCCTCCTAGAAAACCCAATCCCATCCTCCC
TCCCCCTGTTTTCATGAAGATGTTTCTCTACCCACCCATCCAAACACCCA
TTCAAAAACCCACCCATTTTTGGCCCCCCACCCTCAAATCCCCCTAACTT
GGAACAATCTATGGGATCCTTTCTCCGGACTCTGTCAACTTTTCCTCCTT
TTG
TGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGAACATTCCGAAGGACTAGTGCACA
TTGAGAGAGGTGAAGCATATTAAAGTACACTGTGGTTGTATTTGTTGATT
TATTTTTAGAAGATGTTAAGGGATTACATCACCTGATAAGCCACACTTTC
TTATAGAGCAAGTAATTCAGGTATGTTATTCTGAAAGATTCAAAGACTTT
TAATATGGACTATATATTATAAAATGACTAAGTTATAGAGTCATTTGACA
AAGGTGAGTTCTGTTTTGTCTGTGTGCCAAGCTCTCACGTGGCCTTGGCT
TCCTTCCCTTGAACTTAAGGATGTGGAGGGTGACCCCGAGCTCCTGATGC
TCCAGCCCCCACTTTCTGAGTTCTGAGATCCCAGAAACACACACCAGAGC
CCATGCTGGTTCAGACCTGGAGACCTTCCTGCTTCCTTCCCCTGAGGGGA
GGATTATAGGAGGTGTCACCACACTCATTATTGGCTTTTGGTGTTTCTGT
TTTGGTTTTCACTGCTGTGTGACGGCCTTGAATCTAGAGCTTGCACTGAG
TACGCATAATCCCTCTCCTGAGGACTTACTAGGCTATGCCCTGTAAGCCC
ACCCATTTTGTTTAAGCGCTTTGTCATCATCTTCCTGGACCTACAGCAAA
ATGGCTTAAACCACTCTCATCCTGGCTTTTTTGTATACTTAGTTTACCCG
GACCATTTTTCTTCTATCCTTAATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_f01.b1 MSMg01no402_f01.b1 CHROMAT_FILE:
MSMg01no402_f01.b1 PHD_FILE: MSMg01no402_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:10 2005
         (484 letters)



>mm_chr14_99424319_99425202
          Length = 884

 Score =  891 bits (461), Expect = 0.0
 Identities = 476/481 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacagagattttcctgcaattgcttcccacgtgctggggttaaaggcgtgtgta 63
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacagagatccacctgcaattgcttcccacgtgctggggttaaaggcgtgtgta 263

                                                                       
Query: 64  acatacctgaaaaaaaaatatgtgtacacacacacacagatatatatatatatatataaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acatacctgaaaaaaaaatatgtgtacacacacacacagatatatatatatatatataaa 323

                                                                       
Query: 124 catattctcctactcagtccaactaatgttgtctggggttaaaacaaattaatcttgcct 183
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 324 catattctcctactcagtccaactaatgttgtctggggttataacaaattaatcttgcct 383

                                                                       
Query: 184 taaattataacaagattaaagattaaagttttcactagagatggctttgctatgcaaagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaattataacaagattaaagattaaagttttcactagagatggctttgctatgcaaagc 443

                                                                       
Query: 244 tgtgagctcttctcccccgagggtattttatactctctggagctgtttgctgttattagc 303
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 tgtgagctcttctcccccgagggtattttatactctccggagctgtttgctgttattagc 503

                                                                       
Query: 304 cttctcttttctctccagaacagaaggttcagggtctgtcacccacatcaagccagccac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttctcttttctctccagaacagaaggttcagggtctgtcacccacatcaagccagccac 563

                                                                       
Query: 364 agagctctgctgatttttctctagcctcatctcatgtctgcgttctctttgttcatttcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agagctctgctgatttttctctagcctcatctcatgtctgcgttctctttgttcatttcc 623

                                                                       
Query: 424 atttcttttcttcctgtttatctttcccccctggaactctccctgacactatctttcccc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atttcttttcttcctgtttatctttcccccctggaactctccctgacactatctttcccc 683

            
Query: 484 t 484
           |
Sbjct: 684 t 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no402_f01.g1 MSMg01no402_f01.g1 CHROMAT_FILE:
MSMg01no402_f01.g1 PHD_FILE: MSMg01no402_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:10 2005
         (351 letters)



>mm_chr14_99586290_99587040
          Length = 751

 Score =  679 bits (351), Expect = 0.0
 Identities = 351/351 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaacattccgaaggactagtgcacattgagagaggtgaagcatattaaagtacactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 caagaacattccgaaggactagtgcacattgagagaggtgaagcatattaaagtacactg 492

                                                                       
Query: 61  tggttgtatttgttgatttatttttagaagatgttaagggattacatcacctgataagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tggttgtatttgttgatttatttttagaagatgttaagggattacatcacctgataagcc 432

                                                                       
Query: 121 acactttcttatagagcaagtaattcaggtatgttattctgaaagattcaaagactttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acactttcttatagagcaagtaattcaggtatgttattctgaaagattcaaagactttta 372

                                                                       
Query: 181 atatggactatatattataaaatgactaagttatagagtcatttgacaaaggtgagttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atatggactatatattataaaatgactaagttatagagtcatttgacaaaggtgagttct 312

                                                                       
Query: 241 gttttgtctgtgtgccaagctctcacgtggccttggcttccttcccttgaacttaaggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gttttgtctgtgtgccaagctctcacgtggccttggcttccttcccttgaacttaaggat 252

                                                              
Query: 301 gtggagggtgaccccgagctcctgatgctccagcccccactttctgagttc 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtggagggtgaccccgagctcctgatgctccagcccccactttctgagttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)