BAC Information

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BAC

Clone NameMSMg01-402O06
Chromosome14 (Build37)
Map Location 10,245,070 - 10,245,360
singlet/doubletsinglet
Overlap genenone
Upstream gene4930452B06Rik, LOC100041948
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402O06.T7 (MSMg01no402_o06.b1)MSMg01-402O06.TJ (MSMg01no402_o06.g1)
ACCAG501931AG501932
length799772
length of high quality
(start - end)
32 (72 - 103)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no402_o06.b1 PHD_FILE: MSMg01no402_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:57 2005CHROMAT_FILE: MSMg01no402_o06.g1 PHD_FILE: MSMg01no402_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGCGGAAT
TCCTTGTTTTTTACTCATGAGCATGATGTATTGTTGTATCTTTTAACTGA
GGTAAAGTGTACCACAATTGCATCTGCAAAGTGTATAATTCAGTGGTGCT
TCATACATTCTTACCGCTGTGTGTCTGTCCACTGCACTCCGCTGTAGTCT
GAGTGTGGCCCTTGAGAGCCATGTGTCATAGATTCAATCCCTATGAACAT
GTGAATGGAATATAATGTCTTTTTAACAATGTAAATTTATGTCATTTGCA
CCACTTCCTCACGCATATTTTTGATGCCATTCTATGAGGACTTCTGAAAT
AGATTTTTTTTCTTCTCTTCACCTCTGACAATTATATGTATTATTCTATA
TTTCCACCCCCTTTTCCCTATCCGCCTTTGTACCCCGTTGTTACTCTGTG
TTTATAACCCCTATACCGCCACCAGTATCTTCACCCCGTATTTTGTTTCC
TTTTATATTCCTGACACCCCCCCCCCTGCTTTTCTTCCTCTTATTTTCTT
GACCTGTTATCTCTCTACTTTTAATTCATGAATATTTTTTACACTCAATC
TCCCTTCCCTCCTTTACCCCCTCACTTTCATCTTTTTCTCCTATTTTATT
CTCCTTGTCCCTCATCCTTTTAGTCTTTTCTAATTTCCCCACCCTTTTTT
ATACATTTCTCTTCTCGCTGCTCTCTTTCCCATTCACCTCGTCCCACTCT
TTTCCATTTTATTCTTTTATTTCTTTTTTTTTCCTTTTACTCCCCATTT
TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTTTTATCTGTGTTCAATCTTTTTTT
TAAACTCTTAACTTTAGTACTTGTCAATATTTTATAATTTGGTTTTTAAA
ATTCCTTTTTTTCCCATCTTTTATTTTTCTGAAGAGGTTGCTTTCTGTTT
TCAGATTCATTTACTCCTTCTAGAGTAGTTACTATTTCTAAAATCACCAT
GATTTCTTCTTCCTTTGTAGGCATTAGCATTTACTTAATGTTTTCTATAT
TGTTTCAAATTAAAAGTTCCAATTTTGACGTATGTTTTAAATAACTTTTG
CTTGATTTCATTCTCTGTAATGAACACTCTCTTCTCATATTTTTTATGAG
TGCCTTGTATATTTTTGAACTGCATATTTCTCTTTTCCTGACTCTTGAAC
TTTTGTCTAACATGTTTGTCTCACCAAAATGGTTTTTCCTTGCTAGCATT
TTGTCTTTATTTTTTTTTTCTTCCTAAAGTTTTCATTTTCCCTTGAATTT
TTGCTCTTTTACAAATATATTTTTTAGGTTTTATTATTCCTCTTTTTCCG
ATCTCTTTTCTTAACTTTTATTAATACTCTTTTGCCTTGTTTGTTTCTGC
ACTGATTTAATTTCTCTCTCCCCCTCTCTCCTTTTGGTTATCCCTAGTTT
CCTTTTATCCTTTCTCTTCTTCCTTTGTTATTTTCTTAATTGCTTTCACA
ATCTCTTTGGTTGGTTCTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_o06.g1 MSMg01no402_o06.g1 CHROMAT_FILE:
MSMg01no402_o06.g1 PHD_FILE: MSMg01no402_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:57 2005
         (291 letters)



>mm_chr14_10244870_10245560
          Length = 691

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttttatctgtgttcaatcttttttttaaactcttaactttagtacttgtcaatatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ccttttatctgtgttcaatcttttttttaaactcttaactttagtacttgtcaatatttt 432

                                                                       
Query: 61  ataatttggtttttaaaattcctttttttcccatcttttatttttctgaagaggttgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ataatttggtttttaaaattcctttttttcccatcttttatttttctgaagaggttgctt 372

                                                                       
Query: 121 tctgttttcagattcatttactccttctagagtagttactatttctaaaatcaccatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tctgttttcagattcatttactccttctagagtagttactatttctaaaatcaccatgat 312

                                                                       
Query: 181 ttcttcttcctttgtaggcattagcatttacttaatgttttctatattgtttcaaattaa 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 311 ttcttcttcctttgtaggcattagcatttacttaatgttttctagattgtttcaaattaa 252

                                                              
Query: 241 aagttccaattttgacgtatgttttaaataacttttgcttgatttcattct 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aagttccaattttgacgtatgttttaaataacttttgcttgatttcattct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)