BAC Information

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BAC

Clone NameMSMg01-403B04
Chromosome14 (Build37)
Map Location 113,168,259 - 113,168,634
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403B04.T7 (MSMg01no403_b04.b1)MSMg01-403B04.TJ (MSMg01no403_b04.g1)
ACCAG502070AG502071
length732761
length of high quality
(start - end)
491 (48 - 538)372 (75 - 446)
definitionCHROMAT_FILE: MSMg01no403_b04.b1 PHD_FILE: MSMg01no403_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:13 2005CHROMAT_FILE: MSMg01no403_b04.g1 PHD_FILE: MSMg01no403_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTCCTTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATTTTACAGCACATGCCATTGCTGT
TCTGTTCAGGAATCTTTGCCCTGTACCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTTTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACATGATAACAACCAGTTGTGTCAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGTGTGTGGGTTCATTTCTGCGGCTTCAATTCTATTCCATTG
GTCTACTTGTCTGTCTCTATACCAGTAACATGCAGTTTTTATCTCAATTG
CCCTGTAGTAAACCTCTATGTCCGGCATGGTGATTTTTCAAAAGTTTTTT
TATTCTTGTAGAAAAGCTTTTGTTTCTTAATN
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGACTTTGTTTTGTTATCTGGAAAT
GTAGGACAAAAAAAGTTCTTCAAATCCTCTTGAAACTTGGAGCCTTGCTG
TCAATATTCTGTTCAATCTACTTCTACTTCAAATCAGTCAAAGTGATATT
TGAAACCTTAGTGCAATGACAGGTTTGAGTGGAAATAAATTATGTAGAGA
TGATCTGCAGCTACACACATATCAAGTGGCTATAAGGTCTTAATTGCTGT
GCTGGTAGGACATGTGGTATTGTCATTTCTATGATCCATTACATGGTTTC
TGTACGTAAAATTTGTCATTTGCTTACTTATTCAAAAAAAAAAAAAAAGG
AAAAAGCAAGCTGAATGGATGAGGGCACTGAAGGTCACAGAAGGTAGAGT
TGACCTCAATCTGGCCAAAAGGCAACACTATGATATGAACTGAGTGTAGT
CCTGCTGTGGATCCTCTCACAATGAGTCAGCAGTGCAAGGTTTCCCATCA
TGCTATAACTTTTTTTTTTTGTATGAGAAAGGAATGTGCCCTTTGTCAAA
TAAAGACGTGCTTTGTTGAACGTGGGATCCCAAATAACTATTCCAAATTA
CTTTCCCATATTGGACACGTTCATTAGACCCCCAATGCATTATAAACGGC
TACACCTGGACTCCACATAGTTCTACTCTTTGTATGCGGTAACCCCCTTG
TTCTTGGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_b04.g1 MSMg01no403_b04.g1 CHROMAT_FILE:
MSMg01no403_b04.g1 PHD_FILE: MSMg01no403_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:13 2005
         (372 letters)



>mm_chr14_113168059_113168834
          Length = 776

 Score =  685 bits (354), Expect = 0.0
 Identities = 369/376 (98%), Gaps = 4/376 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggactttgttttgttatctggaaatgtaggacaaaaaaagttcttcaaatcctcttgaa 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tggactttgttctgttatctggaaatgtaggacaaaaaaagttcttcaaatcctcttgaa 517

                                                                       
Query: 61  acttggagccttgctgtcaatattctgttcaatctacttctacttcaaatcagtcaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 acttggagccttgctgtcaatattctgttcaatctacttctacttcaaatcagtcaaagt 457

                                                                       
Query: 121 gatatttgaaaccttagtgcaatgacaggtttgagtggaaataaattatgtagagatgat 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gatatttgaaaccttagtgctatgacaggtttgagtggaaataaattatgtagagatgat 397

                                                                       
Query: 181 ctgcagctacacacatatcaagtggctataaggtcttaattgctgtgctggtaggacatg 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 396 ctgcagctacacacatatcaagtggctataaggtcgtaattgctgtgctggtaggacatg 337

                                                                       
Query: 241 tggtattgtcatttctatgatccattacatggtttctgtacgtaaaatttgtcatttgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tggtattgtcatttctatgatccattacatggtttctgtacgtaaaatttgtcatttgct 277

                                                                       
Query: 301 tacttattc----aaaaaaaaaaaaaaaggaaaaagcaagctgaatggatgagggcactg 356
           |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tacttattcaaaaaaaaaaaaaaaaaaaggaaaaagcaagctgaatggatgagggcactg 217

                           
Query: 357 aaggtcacagaaggta 372
           ||||||||||||||||
Sbjct: 216 aaggtcacagaaggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 776
Length adjustment: 9
Effective length of query: 363
Effective length of database: 767
Effective search space:   278421
Effective search space used:   278421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)