BAC Information

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BAC

Clone NameMSMg01-403B18
Chromosome14 (Build37)
Map Location 10,427,173 - 10,666,496
singlet/doubletdoublet
Overlap geneFhit
Upstream gene4930452B06Rik, LOC100041948
Downstream geneLOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403B18.T7 (MSMg01no403_b18.b1)MSMg01-403B18.TJ (MSMg01no403_b18.g1)
ACCAG502098AG502099
length778811
length of high quality
(start - end)
545 (40 - 584)314 (69 - 382)
definitionCHROMAT_FILE: MSMg01no403_b18.b1 PHD_FILE: MSMg01no403_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:16 2005CHROMAT_FILE: MSMg01no403_b18.g1 PHD_FILE: MSMg01no403_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,427,173 - 10,427,702)(10,666,196 - 10,666,496)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CCAATGGAGGTATATCAAGTTGCCAATGGACTGTGTGGCAGATGAGGGGC
ATAGATCTCATTTCTCCCACCCAGCCCAGGAGGAGCTAACATCGCTGACA
ACTTGACCTCAGACTTCTAGCTTCTAGAGCTGGGAGGCAATACATTTATT
TTGTGTCTTAGCTAGTGCCAATGTATGGTTAGTTATAGCAACAGTGTCTT
ACTCTTCTCCCCATTTCATAGCAGCCAGGGCACAGAAAAGCCAGAGGATG
TGTCCAAGGTCACAAGGCTATCATGTGGCAGGACCAGAGTCCACAGTTAG
GCCTGACACTGGAGCTCATACCTATAGTCACTGCCACAGTTCTTGTTGAC
ACAGGATCCTGAGAAAATCCTATCTCACATATCTAAGAAGTGGATAAAAT
AGCATGTTCCTTCTAATGTCCCACAGTTTAAGGAAAATGGAAGTGGTTCC
TCTTTTCATGTGTGCATCCAGAGCCATTGATTTCAAACAAGAGTGACTGC
TGGGAACACCTGCCTCCTACATCTTAAGGGAAATTATCCTTTTCTCACAG
CGAGAGTAGCAATGGTACCATGTTTTCATCCCCTCTCCTAAAAGAGAGGA
AGAGGGCCCATATTATTCTGCCCTTTATGAAAGCCTTCGCGGGGAAATCA
TCTTTAACACTATATTGCGTTTGAACAATGCACCAGTGCGCCCTTAAACC
CTATGCCCCGGTTTGGGGCGGGGGGGGN
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTAAGCAGGAGACAATATCATCTATGGTGTT
CAACTTTCTTAATGCTAAGACTCTTAAATATATTTCCTCATGTTGTAGTG
ACCTCCAACCATAAAATTGTTTTCTTTGCTACTTCATAAGTATAATTTTG
CTACTGTGATGGATCATAATGTAAATATTTTTAGAAATAGAAGTTTGTCA
AAGGGGCCATGGCCCACAAATTGAGAACTACTCTCTCTGAGAAAACTCAT
TCTTATTTTATAGTAATTAAGGACTCTGAGTTTGAGGATGAAACTTTTTT
TTCATCTCGCGCATGCGTATTTGATTATTTGGCCTAACTTCCGGCACAAG
TGCTTTGCTTTAGATCCTGATTAATCCTCATTCTGTGTTGATATTCCCCT
CTAATACATTCTTATATCACCATGTTTTTCTTTCTTTGCCGCCATTTCCT
TCCTCCATAAATTCTAACTTTTTCTCTTCTACTAATCCCCCCTCTCAATT
CCCCCCCCCTTCCCTAACCTCCTTTTCTTTTCTTCCCCCTGTTCCCTCTC
TTTCTCCTTATTTTTTTTCTTTACCCTCCCTCCCATCTCCCTACCCCGCG
TTATCCACTCCCTTATATTCTCTTCTTTTCCATTCACCCTTTTCTTTTCC
CCTTTTACCTCCCCTTCTTTATCCCTTCCTCTTCCTCTTTTCCCCCCCCT
TCTCTTTCTGCCCTCTTTCTTATTCCCTCTTTTCACCATTTTCCCACCTC
AGTCTCCACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_b18.b1 MSMg01no403_b18.b1 CHROMAT_FILE:
MSMg01no403_b18.b1 PHD_FILE: MSMg01no403_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:16 2005
         (545 letters)



>mm_chr14_10426960_10427904
          Length = 945

 Score =  934 bits (483), Expect = 0.0
 Identities = 521/539 (96%), Gaps = 9/539 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccaatggaggtatatcaagttgccaatggactgtgtggcagatgaggggcata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattcaccaatggaggtatatcaagttgccaatggactgtgtggcagatgaggggcata 273

                                                                       
Query: 65  gatctcatttctcccacccagcccaggaggagctaacatcgctgacaacttgacctcaga 124
           |||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 274 gatctcatttttcccacccagcccaggaggagctaacatcgctgacatcttgaccacaga 333

                                                                       
Query: 125 cttctagcttctagagctgggaggcaatacatttattttgtgtcttagctagtgccaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 334 cttctagcttctagagctgggaggcaatacatttattttgtgtcttagccagtgccaatg 393

                                                                       
Query: 185 tatggttagttatagcaacagtgtcttactcttctccccatttcatagcagccagggcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tatggttagttatagcaacagtgtcttactcttctccccatttcatagcagccagggcac 453

                                                                       
Query: 245 agaaaagccagaggatgtgtccaaggtcacaaggctatcatgtggcaggaccagagtcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agaaaagccagaggatgtgtccaaggtcacaaggctatcatgtggcaggaccagagtcca 513

                                                                       
Query: 305 cagttaggcctgacactggagctcatacctatagtcactgccacagttcttgttgacaca 364
           |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 514 cagttaggactgacactggagctcatgcctatagtcactgccacagttcttgttgataca 573

                                                                       
Query: 365 ggatcctgagaaaatcctatctcacatatctaagaagtggataaaatagcatgttccttc 424
           ||||||||||||||||||||||||         |||||||||||||||| ||||||||||
Sbjct: 574 ggatcctgagaaaatcctatctca---------gaagtggataaaatagtatgttccttc 624

                                                                       
Query: 425 taatgtcccacagtttaaggaaaatggaagtggttcctcttttcatgtgtgcatccagag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taatgtcccacagtttaaggaaaatggaagtggttcctcttttcatgtgtgcatccagag 684

                                                                      
Query: 485 ccattgatttcaaacaagagtgactgctgggaacacctgcctcctacatcttaagggaa 543
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 685 ccattgatttcaaacaagagtgactgctgggaacacctgcttcctacatcttaagggaa 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no403_b18.g1 MSMg01no403_b18.g1 CHROMAT_FILE:
MSMg01no403_b18.g1 PHD_FILE: MSMg01no403_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:16 2005
         (314 letters)



>mm_chr14_10665782_10666496
          Length = 715

 Score =  528 bits (273), Expect = e-154
 Identities = 294/301 (97%), Gaps = 1/301 (0%)
 Strand = Plus / Minus

                                                                       
Query: 15  aatatcatctatggtgttcaactttcttaatgctaagactcttaaatatatttcctcatg 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aatatcatctatggtgttcaactttcttaatgctaagactcttaaatatatttcctcatg 656

                                                                       
Query: 75  ttgtagtgacctccaaccataaaattgttttctttgctacttcataagtataattttgct 134
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttgtagtgacctccagccataaaattgttttctttgctacttcataagtataattttgct 596

                                                                       
Query: 135 actgtgatggatcataatgtaaatatttttagaaatagaagtttgtcaaaggggccatgg 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 actgtgatggatcataatgtaaatatttttagaaatagaagtttgtcaaaggggccatgg 536

                                                                       
Query: 195 cccacaaattgagaactactctctctgagaaaactcattcttattttatagtaattaagg 254
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 535 cccacaaattgagaactactctctctgagaaaactcattcttattttaaaggaattaagg 476

                                                                       
Query: 255 actctgagtttgaggatgaaac-ttttttttcatctcgcgcatgcgtatttgattatttg 313
           |||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||
Sbjct: 475 actctgagtttgaggatgaaactttttttttcatctcgtgtatgggtatttgattatttg 416

            
Query: 314 g 314
           |
Sbjct: 415 g 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space:   215330
Effective search space used:   215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)