BAC Information

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BAC

Clone NameMSMg01-403D06
Chromosome14 (Build37)
Map Location 20,995,919 - 21,166,108
singlet/doubletdoublet
Overlap geneKcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717
Upstream geneLOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik
Downstream geneDnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403D06.T7 (MSMg01no403_d06.b1)MSMg01-403D06.TJ (MSMg01no403_d06.g1)
ACCAG502169AG502170
length782762
length of high quality
(start - end)
420 (46 - 465)368 (77 - 444)
definitionCHROMAT_FILE: MSMg01no403_d06.b1 PHD_FILE: MSMg01no403_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:24 2005CHROMAT_FILE: MSMg01no403_d06.g1 PHD_FILE: MSMg01no403_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,995,919 - 20,996,334)(21,165,741 - 21,166,108)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGCAGTTTTAGATCAAGGCTCAAAAGACCTAATGACTCTTTTAC
CAAAGGTGGGTGAGACCAGTGAGCCTCACAGTGTCCACCTTGGCTTGAAA
CAAAGTGAGTGCTCGTATTAACCCTCTGTTCCCCTGAACTGGGCTCAGAG
AAGTTTTTCTCTAAACCTTTCAATATTCTTCGCTTTGAACATTTTGGTCT
GAAGACATTAAACAGTCCACAGTTTTGTTTTTTCATAAATTTGGCGGAGG
GTTGGTGTTAGAACAGATGTCAGAATTTCAAAACTGGGATGTATTTAAGG
GTTTAACCATGAAAGGAGTTATACCAGGGAGCTGGAGAAATGGCTCAGTG
GTTAAGAGCACTGACTGTTCTTCCTAAGGTCCTGAGTTCAAATCCCAGTA
ACCACATGGTGGCTCATAACCATCCATAATGAGATCTGATGTCCTCTTCT
GGTGTGTCTGAATACTGCTACAGTGTCTTACATATTACAATAAACAAATC
TTTCAACTAGAAAGGATTTATACCCACAATTCTCTATAAGCTGCTGAGAC
ACTGTTTATTGTGTTTTCCGGATTTCCCGGGCTCCTCTTTGCTTTCCTAT
TACCATTTAACTAAGCCTTATTTCCCCTTTTTTTCTTCCTTTCACCTTTT
TTCGTCCCTTTATCCCCCTTTTTCAGCCCTTTCTGCTCCCTCTTTTTTCT
TTAAATAACCCTACTCCTCCTCTCATATACTN
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAGAATGCTGTTATTTCTCCTTT
TGTGTGGCTTATGTCCCTTGAACTTTGATGGCCATTTTTAGAGAAGAATG
GAGGGCAGTGGAAAGCTCGCAATGGTAGAGGATGCTGTGGAGTACCATCT
CTTCCTGATACCAGATAAAGCCAGAGGCACAGAAGAGCACAGAGAGATTC
TTCAGAAGTACATTGAACGGATAATGACCCAGTTCGCACCCATACTGGTC
CCTTATATCTGGCAGAATCAGCCTTTCAATCTCAAATACAAGCCTGCAAA
AGGTAAAGTAAGCCTTCCTTCTGAGAGACTTGTTCCATAACCTTAAAAGC
CACTGACGTCTGCCCACATATAGCCAAGCCCCTAACTTTAACTCTATAGA
ATATCTTTATGGTTAGGGATGCGGGGACTGTGGCTGCGTTATGGACTCTC
TCATTGTGTCTAATTGTGAGTGTTGCCGCCGCGATCGCCCCCCTTCGTTT
CTCTTTTCTGTTTCCCCCTTCTCGCCTCGACCTCTTTTTTTTTCTTCCCC
TCCCCCCTGCCTCTCCCCCTTTTCCTCGCTTTCCTTCCTTCTTTTCATCC
CCCCTTCTTTTCCCTTTTCCTTCCCTTCTTTTTCCTTCTCTTCCTCTTTC
TCCCCTTCCCCTTTCCCCTTTTATTTTTCCCCTTTTTCCCTTTTTTACCC
TTTCTTCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_d06.b1 MSMg01no403_d06.b1 CHROMAT_FILE:
MSMg01no403_d06.b1 PHD_FILE: MSMg01no403_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:24 2005
         (420 letters)



>mm_chr14_20995715_20996534
          Length = 820

 Score =  758 bits (392), Expect = 0.0
 Identities = 410/416 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagcagttttagatcaaggctcaaaagacctaatgactcttttaccaaaggtgg 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagcagggttagatcaaggctcaaaagacctaatgactcttttaccaaaggtgg 264

                                                                       
Query: 65  gtgagaccagtgagcctcacagtgtccaccttggcttgaaacaaagtgagtgctcgtatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgagaccagtgagcctcacagtgtccaccttggcttgaaacaaagtgagtgctcgtatt 324

                                                                       
Query: 125 aaccctctgttcccctgaactgggctcagagaagtttttctctaaacctttcaatattct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaccctctgttcccctgaactgggctcagagaagtttttctctaaacctttcaatattct 384

                                                                       
Query: 185 tcgctttgaacattttggtctgaagacattaaacagtccacagttttgttttttcataaa 244
           ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 tcgctttgaacattttgttctgaagtcattaaacagtccacagttttgttttttcataaa 444

                                                                       
Query: 245 tttggcggagggttggtgttagaacagatgtcagaatttcaaaactgggatgtatttaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttggcggagggttggtgttagaacagatgtcagaatttcaaaactgggatgtatttaag 504

                                                                       
Query: 305 ggtttaaccatgaaaggagttataccagggagctggagaaatggctcagtggttaagagc 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 505 ggtttaaccatgaaaggagttataccagggagctggagagatggctcagtggttaagagc 564

                                                                   
Query: 365 actgactgttcttcctaaggtcctgagttcaaatcccagtaaccacatggtggctc 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 565 actgactgttcttcctaaggtcctgagttcaaatcccagcaaccacatggtggctc 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no403_d06.g1 MSMg01no403_d06.g1 CHROMAT_FILE:
MSMg01no403_d06.g1 PHD_FILE: MSMg01no403_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:24 2005
         (368 letters)



>mm_chr14_21165541_21166308
          Length = 768

 Score =  712 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagaatgctgttatttctccttttgtgtggcttatgtcccttgaactttgatggccatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgagaatgctgttatttctccttttgtgtggcttatgtcccttgaactttgatggccatt 509

                                                                       
Query: 61  tttagagaagaatggagggcagtggaaagctcgcaatggtagaggatgctgtggagtacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tttagagaagaatggagggcagtggaaagctcgcaatggtagaggatgctgtggagtacc 449

                                                                       
Query: 121 atctcttcctgataccagataaagccagaggcacagaagagcacagagagattcttcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atctcttcctgataccagataaagccagaggcacagaagagcacagagagattcttcaga 389

                                                                       
Query: 181 agtacattgaacggataatgacccagttcgcacccatactggtcccttatatctggcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agtacattgaacggataatgacccagttcgcacccatactggtcccttatatctggcaga 329

                                                                       
Query: 241 atcagcctttcaatctcaaatacaagcctgcaaaaggtaaagtaagccttccttctgaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atcagcctttcaatctcaaatacaagcctgcaaaaggtaaagtaagccttccttctgaga 269

                                                                       
Query: 301 gacttgttccataaccttaaaagccactgacgtctgcccacatatagccaagcccctaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gacttgttccataaccttaaaagccactgacgtctgcccacatatagccaagcccctaac 209

                   
Query: 361 tttaactc 368
           ||||||||
Sbjct: 208 tttaactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)