BAC Information

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BAC

Clone NameMSMg01-403D23
Chromosome14 (Build37)
Map Location 104,447,862 - 104,448,299
singlet/doubletsinglet
Overlap genenone
Upstream geneIrg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403D23.T7 (MSMg01no403_d23.b1)MSMg01-403D23.TJ (MSMg01no403_d23.g1)
ACCAG502202AG502203
length795790
length of high quality
(start - end)
510 (35 - 544)505 (68 - 572)
definitionCHROMAT_FILE: MSMg01no403_d23.b1 PHD_FILE: MSMg01no403_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:28 2005CHROMAT_FILE: MSMg01no403_d23.g1 PHD_FILE: MSMg01no403_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCCTGA
TCTTTTCCCTCTTTTATCATGAATGGGTGTTGTATCTTGTCAAATGCTTT
TTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTA
TATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCATC
CCTGGAATAAAATCTACTTGGTCAGGATGGATGATTGCTTTAATATGTTC
TTGGATTCGGTTAGTGAGAATTTTATTGAGGATTTTTGCATCGATATTCA
TAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGAGGT
TTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACC
TTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAACTGGAATTAGATCTT
CTTTGAAGGTCCGATAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCTT
TTTTTGGCTGGGAGAGTATTGATAACTGCTTCTATTTCTTTAGGTGATAT
GGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACTTTGTTACCTGGC
AACTGTCCACAAAATTGCCCTTTTCGTCACGGTTTCCCATTTTTGTTGAA
CATAACCCTCTTTTAAAAGAACTCAATGTGGTTTTTGAATTCCTTCCCAA
CATGTGGTAAGGTTCCCCTTTTTTTTTTTAAATTTGTTTAATAAAAATCT
TCCTTGTGGCCCTTTAGGGAATAAAATCACTGTTTTTTTCCCTTN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATCCCAGGTGGTTCCTGTTAGACCTTCTGTGT
TTGTATTCCTCTGTTTTGTGTAAGAATCCAGTAACCTCTTTGTATCTTGC
TGGTGTGTCACCCAACTTCCCTATTTTCTTCTGTATAAAAAGTTTGATGC
TCGATTTGACAAATTACATTCAGATTCTACACAACCTCTCCTGTGTGCAT
CTGTCTGTCATTCCATCCAACGCTTTGCCCACCTGCCCCAGAGACCTGTT
CCATGCAGACAAAGGGATACAGAGGGTCTGCAACAAGCAAGAAACTCCTT
ATTCTTTAGAGATAACGTAATGTATCTGAAACTGTGATGTTTCAAGGGTT
ATGGTCCACTCACAAATATTTACTGAACCCTGACATATTTTAAGTAGGGT
TATACAAAGATATGTCATGGTGTCTGCTCGATCATTGCGATTTTTTTTAT
GGAGAAACACCTGGCCCCCCTCCCCCTCTTGCTAATAGATATATGAGAAT
ATCCCAAGACCACTGGAAAAGTATTTTGAAAAGCTAAGTCTTAAAGAGCG
GATTCACATTTTGCATCTGCCAGCTTTCTACTATGTTTTTTTCTGGGCGG
GGGGTACAATATTCCCTTATTACTAATGACCTTTTCCCCCCTCCCCCCAT
TTCTTTTCCCCCCTCTTCCTTCTCTTTTTCTCCATCCTTTTTTTCCCCTC
TTCTTTCCTCCCATTCCCTTTTTCCTTACCCTTCCACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_d23.g1 MSMg01no403_d23.g1 CHROMAT_FILE:
MSMg01no403_d23.g1 PHD_FILE: MSMg01no403_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:28 2005
         (505 letters)



>mm_chr14_104447394_104448299
          Length = 906

 Score =  785 bits (406), Expect = 0.0
 Identities = 430/438 (98%), Gaps = 1/438 (0%)
 Strand = Plus / Minus

                                                                       
Query: 69  ctctttgtatcttgctggtgtgtcacccaacttccctattttcttctgtataaaaagttt 128
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 906 ctctttgtatcttgctggtgtgtcacccaacttccctattttctcctgtataaaaagttt 847

                                                                       
Query: 129 gatgctcgatttgacaaattacattcagattctacacaacctctcctgtgtgcatctgtc 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 gatgctcgatttgacaaattacattcagattctacacaacctctcctgtgtgcatctgtc 787

                                                                       
Query: 189 tgtcattccatccaacgctttgcccacctgccccagagacctgttccatgcagacaaagg 248
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 786 tgtcattccatccaacgctttgcccacctgccccagagacccgttccatgcagacaaagg 727

                                                                       
Query: 249 gatacagagggtctgcaacaagcaagaaactccttattctttagagataacgtaatgtat 308
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gatccagagggtctgcaacaagcaagaaactccttattctttagagataacgtaatgtat 667

                                                                       
Query: 309 ctgaaactgtgatgtttcaagggttatggtccactcacaaatatttactgaaccctgaca 368
           ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 666 ctgaaactgtgatgtttcaagggttatggcccactcacaaatattttctgaaccctgaca 607

                                                                       
Query: 369 tattttaagtagggttatacaaagatatgtcatggtgtctgctcgatcattgcgattttt 428
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 606 tattttaagtagggttatacaaagatatgtcatggtgtctgctcaatcattgcaattttt 547

                                                                       
Query: 429 tttatggagaaacacctggccc-ccctccccctcttgctaatagatatatgagaatatcc 487
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 546 tttatggagaaacacctggccctccctccccctcttgctaatagatatatgagaatatcc 487

                             
Query: 488 caagaccactggaaaagt 505
           ||||||||||||||||||
Sbjct: 486 caagaccactggaaaagt 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 906
Length adjustment: 10
Effective length of query: 495
Effective length of database: 896
Effective search space:   443520
Effective search space used:   443520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)