BAC Information

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BAC

Clone NameMSMg01-403I01
Chromosome14 (Build37)
Map Location 16,200,044 - 16,200,279
singlet/doubletsinglet
Overlap geneLrrc3b
Upstream geneLOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
Downstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403I01.T7 (MSMg01no403_i01.b1)MSMg01-403I01.TJ (MSMg01no403_i01.g1)
ACCAG502398AG502399
length740745
length of high quality
(start - end)
249 (64 - 312)237 (78 - 314)
definitionCHROMAT_FILE: MSMg01no403_i01.b1 PHD_FILE: MSMg01no403_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:49 2005CHROMAT_FILE: MSMg01no403_i01.g1 PHD_FILE: MSMg01no403_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCGCTAAACGACTCACATAGTCAGAGAATGCGCGGAATTCTTAC
CTGATACTACAGAGGACTTGAATTGTGAGGCTGTCAGATCATGGCTGATA
ATCACCTGATAAAATGTTCAGCAACCTTTATCATCAGGTAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAACTCGGGTGACAGCCGATGCTGGTGATGATGTGGAGAAAGAGGAATAC
TCCTCCATTGTTGGTGGGATTGCAAACTTGCACAAGCACTCTGGAAATCA
GTCTGGCGGTTTCTTTTTATTTTGGACATAGTACTACTGGAGGATCCCAC
AATACTTCTCCTGGGCATATATCTAGAAGATTTTCCAACTGTAATAGGGA
CACATGCTCTACTATGCTCCATAGCCATCCCCCTCTACAATAATCCGAAC
TTGTAAAGACCCCAAGGTCCCCCGCAAAAGATGGGCACCAAAAAGTGGGC
CTTCTCCCCATGGGGGGCTTTTTTCCCTTCATATACAATGCCTTCTCCGA
TTTCTTTGCCTTCCGTGGTTTTTCTCTTATTTTTTTCTCCGCTATAACAT
GTAAACTCCCTCTTCCCATCACTTTTTAGGGTTTTCTTTATTTTGTGTTA
TCCGTTTGGATTTTTCCTTTCATATAAACCCCCCCTAATATCCCTCCCTA
TTCCCCACCGTTTCGTCTTCCCTATTAACCTTTCTTCTTT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGAACAAGAAGAACTCTGAAAT
CTTTTGGGGATATTGTGACCATTAGATCATGTAGGACTGCAACAAAATAT
TCTGAAGTGGCATTTTTTGCTTAGTATCTAGTGTTCACTTAGAAGTGTGT
CCTAGTTGGAGTCTCTGTTGCTGTGCTGAAACTGTGACTAATAGCAAGTT
GTTAAGGAACAGGGTTTTTTTTTGGCTTATAGATCTGCATCTTACTTGAT
TATTGAAGGACAGTAACTCTATCTTTGTAGGAACCTGGAGACAGGAGCTG
AAGCAAAGATCATGGAGGAGGCCCTGGGTCTTGGCTTGCCCTTCATGGCT
TGATCAGCCTACTTTCATATAGAACCCAGGACTATGAGCCCAGCATTGGT
GTCACTCGAAGTGTTCTGTGGTGTCCCTTTCCCCGCCAATTCCTATTTAC
CAAAACCCCCTATTGCTGGATCTCTACGGTGCGTTCTTCTTTTCCACCGA
GGTTTCCTCCCCTTTGATGCCTTATCTCGTGTGTTTAGGATATTGCGCAC
TTCCCTTTTCCACAGCCTCTTCGCGGCAGTTAGTTTTTTGTTTTGACACA
CCCCCCGCTCCCCCTTTTTTTTTCTTTGCCCCTGCCCCCGCCGCCCCCCT
ATTATCCCCCTTTTTCGCCCCTACCCCCTCGTTATCCTTTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_i01.g1 MSMg01no403_i01.g1 CHROMAT_FILE:
MSMg01no403_i01.g1 PHD_FILE: MSMg01no403_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:49 2005
         (237 letters)



>mm_chr14_16199959_16200596
          Length = 638

 Score =  418 bits (216), Expect = e-121
 Identities = 232/238 (97%), Gaps = 3/238 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaacaagaagaactctgaaatctttt-ggggatattgtgaccattagatcatgtagga 59
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 atgaacaagaagaactctgaaatcttttgggggatattgtgaccattagatcatgtagga 262

                                                                       
Query: 60  ctgcaacaaaatattctgaagtggcattttttgcttagtatctagtgttcacttagaagt 119
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcaacaaaatgttctgaagtggcattttttgcttagtatctagtgttcacttagaagt 202

                                                                       
Query: 120 gtgtcctagttggagtctctgttgctgtgctgaaactgtgactaatagcaagttgttaag 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 201 gtgtcctagttggagtctctgttgctgtgctgaaactgtgactaatagcaagttgggaag 142

                                                                     
Query: 180 gaacagggtttttttttggcttatagatctgcatcttacttgattattgaaggacagt 237
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gaacagggttttttt--ggcttatagatctgcatcttacttgattattgaaggacagt 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 638
Length adjustment: 9
Effective length of query: 228
Effective length of database: 629
Effective search space:   143412
Effective search space used:   143412
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)