BAC Information

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BAC

Clone NameMSMg01-404A09
Chromosome14 (Build37)
Map Location 51,029,392 - 51,029,844
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736
Downstream geneOlfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404A09.T7 (MSMg01no404_a09.b1)MSMg01-404A09.TJ (MSMg01no404_a09.g1)
ACCAG502795AG502796
length769791
length of high quality
(start - end)
454 (65 - 518)398 (66 - 463)
definitionCHROMAT_FILE: MSMg01no404_a09.b1 PHD_FILE: MSMg01no404_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:32 2005CHROMAT_FILE: MSMg01no404_a09.g1 PHD_FILE: MSMg01no404_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCGCTNTACGACTCCTATATTCATAGAATCCGCGGAATCTATAT
TTTGCATAAAAAATCTCTCTGTTTGAGTCTTTGTTTCATGTTGTTCTTGG
GAAGAAAGACTACCTCTGGATCTTCTCTCACATGTTTTCCTATTGGCCCA
GTGCTGTCTGCCTTATCCAGATTGCTGTATGCTATATTTACTTAGTCCTA
CTATTCTAACCCCATTTACAAAAATACAGAGACATTGGTTTTCCTGGGCT
CCAAACCTACTGTGTGCATTTGCTACCTATCTGCAGGGGATCTCAGCACT
CTGCCTGCATTTTTTGTTTTAGAGCTTTAAGCGGTTAATGATCATATTTG
CAAATGATTGATCTTATGGACTTTTATTTGTGTTTGTTAATTAGAGAACT
GGTTAATAGTGTTCCTTGTTACTATTTTCTTCCCAAAATTCTCATAAAAG
TAACAAATCTTCTGACCAAATAATAATCTTTTAATTTGTTTAAAAATAAA
AAATGCTTATTTTAACCATAAAAAAGATTCTCTCTGATCTTTATCTACTT
TCAAATATTTTTTTCTGACTTCGNTGACAGTAGGCTCATGAAACTTAGAA
AATTCTCCANTATTTATTTGCTTACATCCCAATTTATGACCTTAATCATT
TTATTACCTTTTGTGGAAAAAAAAAATCTTTTGCCTTATGTCCTTAACCT
CTATTTTCCAAAATCCCTTTTCTACTCCAATATTTTGCTCCTTCCCTACC
CCTTTTTTTACTTGTTTTT
GTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCAGTATTGATTCCCATAGTAGCTACATAAGTTTT
TAATCTTACCAACAATGAATGAATGTTTCCTTCATACACATGTCCTCCAA
CATTTGTTTAAATTATTTTATTTGTTTTTAATATTCTCACTGAGGTAAGA
TATAATCTTAAAGTTTTTTATTTGCGTTTCCCTAGTTCCTAAGGAAATAT
ATTTTCTTCTTCATAAAACTGTTCAGAACTCACCAATGGACAGATTCTGG
AAACAGAAACTAATCTGATACACATTTACACTAACAGGAGTTATGAAATA
AATAGATTTAACAGATATTAACAGATATTTACAGAATATTTTATCCTAAA
ACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTCCTCCAAAAC
TGACTATATAATCGATGACAAAACAGGCCTCAACAGATACAAAAATGATG
AAATTATCCAATGCATCCTATCAGATCACCCCAGACTGAGGCTGATCTTT
CATAATCAAATAATTAATAGAATGCCTATATTCCCGTGTAAAATTGATAA
ACCCCCCTACTCAATGATACCCTTGTTTCTGGAAGGAATTATTTAATAAA
TTCCCAGGGTTTTTTTAAGATTTATTGGAAAAGATAATCCTCCATTTATT
CCCAACCTTATTGGGGCTCACATTTATTGGGGGTCCTTTCAAAGTTAAAA
ATTATCACCCCCCCGCTTTTGCCGTGTATTAAATAAAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_a09.b1 MSMg01no404_a09.b1 CHROMAT_FILE:
MSMg01no404_a09.b1 PHD_FILE: MSMg01no404_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:32 2005
         (454 letters)



>mm_chr14_51029243_51030095
          Length = 853

 Score =  826 bits (427), Expect = 0.0
 Identities = 447/457 (97%), Gaps = 7/457 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctctgtttgagtctttgtttcatgttgttcttgggaagaaagactacctctggatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ctctctgtttgagtctttgtttcatgttgttcttgggaagaaagactacctctggatctt 543

                                                                       
Query: 61  ctctcacatgttttcctattggcccagtgctgtctgccttatccagattgctgtatgcta 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctctcacatgtgttcctattggcccagtgctgtctgccttatccagattgctgtatgcta 483

                                                                       
Query: 121 tatttacttagtcctactattctaaccccatttacaaaaatacagagacattggttttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tatttacttagtcctactattctaaccccatttacaaaaatacagagacattggttttcc 423

                                                                       
Query: 181 tgggctccaaacctactgtgtgcatttgctacctatctgcaggggatctcagcactctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgggctccaaacctactgtgtgcatttgctacctatctgcaggggatctcagcactctgc 363

                                                                       
Query: 241 ctgcatttttt---gttttagagctttaagcggttaatgatcatatttgcaaatgattga 297
           |||||     |   ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 362 ctgca----gtaaggttttagagctttaagcagttaatgatcatatttgcaaatgattga 307

                                                                       
Query: 298 tcttatggacttttatttgtgtttgttaattagagaactggttaatagtgttccttgtta 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcttatggacttttatttgtgtttgttaattagagaactggttaatagtgttccttgtta 247

                                                                       
Query: 358 ctattttcttcccaaaattctcataaaagtaacaaatcttctgaccaaataataatcttt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctattttcttcccaaaattctcataaaagtaacaaatcttctgaccaaataataatcttt 187

                                                
Query: 418 taatttgtttaaaaataaaaaatgcttattttaacca 454
           |||||||||||||||||||||||||||||||||||||
Sbjct: 186 taatttgtttaaaaataaaaaatgcttattttaacca 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 853
Length adjustment: 10
Effective length of query: 444
Effective length of database: 843
Effective search space:   374292
Effective search space used:   374292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)