Query= MSMg01no404_c16.b1 MSMg01no404_c16.b1 CHROMAT_FILE:
MSMg01no404_c16.b1 PHD_FILE: MSMg01no404_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:44 2005
(489 letters)
>mm_chr14_23031334_23032223
Length = 890
Score = 828 bits (428), Expect = 0.0
Identities = 465/486 (95%), Gaps = 15/486 (3%)
Strand = Plus / Plus
Query: 5 gaattcagaagtattgggttaacagtatcttcttcattaaggttgacagttttgcaccgg 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaagtacagggttaacagtatcttcttcattaaggttgacagttttgcaccgg 264
Query: 65 ttttaaagttccatcttccttccctccagagtagctctctccctcccctcttttgttcac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttaaagttccatcttccttccctccagagtagctctctccctcccctcttttgttcac 324
Query: 125 tttcttccttctccttccccctctcttttctccctttcgttactgagggagaaaaccaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcttccttctccttccccctctcttttctccctttcgttactgagggagaaaaccaag 384
Query: 185 actgccctctccatcactgccttgttattttctagccaagtaaggatagata-ttttact 243
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 385 actgccctctccatcactgccttgttattttctagccaagtaaggatagatacttttatt 444
Query: 244 aaccagtaaaagattgtcaaaagacctttttgttttctgaaatcataaatgaccttctct 303
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 aaccagtaaaagattgtcaaaagatctttttgttttctgaaatcataaatgaccttctct 504
Query: 304 tctcttctccttccttttagaggtgtgcaggcagagtgtctttacttctgtttttctttc 363
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctcttctccttccttttaggggtgtgcaggcagagtgtctttacttctgtttttctttc 564
Query: 364 tctctgcacacacacacacacacacacacacacacacacacacacacacacacaaactta 423
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 565 tctctgcacacacacacacacacacacacacacacacaca--------------aactta 610
Query: 424 ctctctttctctctcttgaaggtacaggatacgccttttgtgttccatttattgtaaaat 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttctctttctctctcttgaaggtacaggatacgccttttgtgttccatttattgtaaaat 670
Query: 484 attaca 489
||||||
Sbjct: 671 attaca 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space: 421520
Effective search space used: 421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_c16.g1 MSMg01no404_c16.g1 CHROMAT_FILE:
MSMg01no404_c16.g1 PHD_FILE: MSMg01no404_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:44 2005
(528 letters)
>mm_chr14_23239371_23240298
Length = 928
Score = 998 bits (516), Expect = 0.0
Identities = 525/528 (99%)
Strand = Plus / Minus
Query: 1 cttgatgaggacagggctctgagtgacagtgaaaatttttctttcatttggcaagtaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cttgatgaggacagggctctgagtgacagtgaaaatttttctttcatttggcaagtaatg 669
Query: 61 aaatcagtaaggcaatggatcaccactgttgctaacagaatcttcttgtgtcatcccctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaatcagtaaggcaatggatcaccactgttgctaacagaatcttcttgtgtcatcccctt 609
Query: 121 cactgtacatgcaggcatgagatacacaccgatgatcttttctagaagtggtacgtgtag 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 608 cactgtacatgcaggcatgagatacacaccgatgatctcttctagaagtggtacgtgtag 549
Query: 181 ggcaattgcatcattaaattgaatgtaatgatacccccttccctctcccctccctatcct 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 548 ggcaattgcatcattaaattgaatgtaatgatccccccttccctctcccctccctatcct 489
Query: 241 ctcactctctaactcagctccatgacacacaccttgcaaatgtcaacacacaaggagatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctcactctctaactcagctccatgacacacaccttgcaaatgtcaacacacaaggagatc 429
Query: 301 ctgaagaccagtgggcagaaagttctgattagcagcaaaaatctatcatgcgatactgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctgaagaccagtgggcagaaagttctgattagcagcaaaaatctatcatgcgatactgaa 369
Query: 361 cactcatccctgcaccaagaggagatgataattgctttgcagtgcaaggtgggggaagct 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cactcacccctgcaccaagaggagatgataattgctttgcagtgcaaggtgggggaagct 309
Query: 421 tgacctccaagtgtctctgggagtattagcatgtaataaaggtgggtgctgtcaaaggcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgacctccaagtgtctctgggagtattagcatgtaataaaggtgggtgctgtcaaaggcc 249
Query: 481 attgctgagcacacccaggacaccctcagacagcttcaccatctgccg 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 attgctgagcacacccaggacaccctcagacagcttcaccatctgccg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
