BAC Information

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BAC

Clone NameMSMg01-404E02
Chromosome14 (Build37)
Map Location 28,596,999 - 28,597,464
singlet/doubletsinglet
Overlap geneErc2
Upstream geneDnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404E02.T7 (MSMg01no404_e02.b1)MSMg01-404E02.TJ (MSMg01no404_e02.g1)
ACCAG502970AG502971
length741740
length of high quality
(start - end)		514 (36 - 549)524 (66 - 589)
definitionCHROMAT_FILE: MSMg01no404_e02.b1 PHD_FILE: MSMg01no404_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:51 2005CHROMAT_FILE: MSMg01no404_e02.g1 PHD_FILE: MSMg01no404_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACAG
TTTGTTCGGTAGGTATCCAGAAGGAGGCTGTCTTCTGCAGGCATACAGGG
GGAGAGTCTCTTCCACCTTGGGCAGAGCTTAAGCATAAGACCTCAAAGCC
AACCCCCCACAGTGACACACTTCCTCCAACAAGGCCACACCTGCTCCAAC
AAGGTCATACCTCTTAATAGTGTCACTTCTCATGGGCCAATCATATTGAA
ACCATCACACTGAGTCTAGACTCAGAAAAGCAGACCTAAGAGAATCTTAC
AGTGGCTCCATAGTGACTGTATTGGGGGCAGGAATTCTGGGAAGAAAAAG
TATACTATCTCATTAAGGGATAGCTATCCATTCTATTTCCTTTATTTATT
TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTATATTTTTACATATGTGTGTCTCTGTGTGTGNCTATATG
TGAGTATAAGAGTACAGGTACCCACAGAGGCCGTTAGACCCCCTGGAGCT
GGAGTTGCAGGCAGTTGTCAATCTCTCAGAAAGGACACACCTTTCTGAAC
AGGGAAATTAAGTCCTCCCGAATATCTTCAACTGATCTAAAATTGTATCT
TTCCAGTCTCTTTATGCTGACTTCATAGGGATTCATCCTCCTAAAGGGTG
CGCCCTTAAACCAATGATTGACTTGCCCAGGGGGTAGGCGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGTTGCAATACATACACACACACACACACTGTCTT
TTTCTAAAAATCAGGGGGTTGAGGTCATGGAATAATGATTTATGGGATAA
TCAAAAGGGAACTTGGAGTAAATGACTGAATTCATAAGTAAATAAAATTT
AGGCCTTGGTGTGAGAAAGCTGAGCTACCTGGAGGAGCTATCTGGCGATC
TCCAGAGAAAGCTGTTTCAAGCAGAAAACAGGCTGTTGTAGTCTCCCCTC
CCCCAGCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCTGCTCATTCGT
TCTGCCACGCCCACTGCTGGAACCTGCGGAGCCATACACATACACGTGCA
CCTTTCTACTGGACCAGAGATTATTCGGCGGGAATCGGGTCCCCTCCCCC
TTCCTTCATAACTAGTGTCGCAACAGTAAAATTTGAGCTTTGATCAGAAT
AACTGTCTTGGCTACATTTCTTTCTCTTGCCACCTAGCCCCTCTTCTCTT
CCAGGTTTCCAAAATGCCTTTCCAGGCTAGAACCCAGGTTGTGGTCTGCT
GGCCGGACACAACAGGCTGTGAGTTTGTACCCCACAATTGACTTCCAGTT
GGTTGTTTTTTTTTACCATTCTTCAAAACCTCTCCTTTCAGAAATCCCTC
TCCCAATCAAGGCTGAACCCTGGGACAGGGGGGCCTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_e02.b1 MSMg01no404_e02.b1 CHROMAT_FILE:
MSMg01no404_e02.b1 PHD_FILE: MSMg01no404_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:51 2005
         (514 letters)



>mm_chr14_28596795_28597708
          Length = 914

 Score =  760 bits (393), Expect = 0.0
 Identities = 459/510 (90%), Gaps = 44/510 (8%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacagtttgttcggtaggtatccagaaggaggctgtcttctgcaggcatacagg 64
           ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattctacagtttgatcgataggcatccagaaggaggctgtcttctgcaggcacacagg 264

                                                                       
Query: 65  gggagagtctcttccaccttgggcagagcttaagcataagacctcaaagccaacccccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggagagtctcttccaccttgggcagagcttaagcataagacctcaaagccaacccccca 324

                                                                       
Query: 125 cagtgacacacttcctccaacaaggccacacctgctccaacaaggtcatacctcttaata 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagtgacaaacttcctccaacaaggccacacctgctccaacaaggtcatacctcttaata 384

                                                                       
Query: 185 gtgtcacttctcatgggccaatcatattgaaaccatcacactgagtctagactcagaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtcacttctcatgggccaatcatattgaaaccatcacactgagtctagactcagaaaa 444

                                                                       
Query: 245 gcagacctaagagaatcttacagtggctccatagtgactgtattgggggcaggaattctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagacctaagagaatcttacagtggctccatagtgactgtattgggggcaggaattctg 504

                                                                       
Query: 305 ggaagaaaaagtatactatctcattaagggatagctatccattctatttcctttatttat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaagaaaaagtatactatctcattaagggatagctatccattctatttcctttatttat 564

                                                                       
Query: 365 ttatttatttatttatttatttatttatttatttatttatttatttatttatttatttat 424
           ||||||||||||||||||||                                        
Sbjct: 565 ttatttatttatttatttat---------------------------------------- 584

                                                                       
Query: 425 ttatatttttacatatgtgtgtctctgtgtgtgnctatatgtgagtataagagtacaggt 484
               |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 585 ----atttttacttatgtgtgtctctgtgtgtgcctatatgtgagtataagagtacaggt 640

                                         
Query: 485 acccacagaggccgttagaccccctggagc 514
           ||||||||||||||||||||||||||||||
Sbjct: 641 acccacagaggccgttagaccccctggagc 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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