BAC Information

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BAC

Clone NameMSMg01-404G11
Chromosome14 (Build37)
Map Location 68,539,932 - 68,676,833
singlet/doubletdoublet
Overlap geneDock5
Upstream geneLOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404G11.T7 (MSMg01no404_g11.b1)MSMg01-404G11.TJ (MSMg01no404_g11.g1)
ACCAG503081AG503082
length777781
length of high quality
(start - end)
245 (63 - 307)362 (66 - 427)
definitionCHROMAT_FILE: MSMg01no404_g11.b1 PHD_FILE: MSMg01no404_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:04 2005CHROMAT_FILE: MSMg01no404_g11.g1 PHD_FILE: MSMg01no404_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,539,932 - 68,540,174)(68,676,499 - 68,676,833)
sequence
GGTCCGCTAAAAGAATCACATTTTCAATACGATCCGCGGAANTCACTCTG
TACCCCCACATGGCCTCGAACTCAGTGTTGGCATTTTCCATTCAACACAC
CATACCTGGGATACGAGGGTCACATGGTTCACAGGACACAGAGTACCCTG
AAGATAAAGCTACCACAGCGTATTTCTTGATACCTTGACTGAGTCCGAAA
CAATCTGATTTCCAGAGGGAACTCATCTCCACTGCAAACTCCTTCCCTCA
CACTGCCTGCCAGGACAGAGAGCCTAAGATCTTTAGAGGAGGTGACCAGG
GGTCCTTCCCTCCTCTCTGCTGTGAATAATCAGAGTTGTACTGGGCTTGA
AAATGGGACAGAAGATGGCTTGACCAGCAGAAGGTGCTAACAATTCTGAC
ACCATTTGAACCCCCGGGAGGGGCTGTATGAAGGCTCCAAGGGCAGAAAC
ACAAAGCCCACTTGTCTCTTGCTGGGATGGTGGCTGCCAGCAATTCAGTC
ACTGGATGGGGCCTGTCAGTCTGGGCTCATGGAAGGACATTGGACATCAC
TTGTAAAATACCACTGAATTCCTGCAGTTATGGGCTGTTTTTCTCGAACC
ATTTTCTTGCCTCCAAACAATTTTCCCGAACACTTTTTAAGGTTTTCTCC
TCTCTTACCACTAACCTCCCCACTACCTTTGTGTCCCAATTTCTAACCCC
AGTGTTTAAAATTTTTGAACAAAATTCTCCTCATTTTTTTTATTGTTTCC
TGTACACAAATTTTTTTTCTTTTAGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATTAGTTAAGATGGTAACAAAAAGAGCAGAGCAT
CTTTACCCCTGGAGGCCAGAGCTATACTCCAGACACCGTGGCCAGGTCTG
ACAGCCTTGAGTCTGTTTCTGGAGCTACTGACTGATAAATGGTTTACATG
GGAGCTGGAGATGTTCGGTCAGTAGAGGCCTTGGGTAGTTTGTATGAAGC
CCTGAGTTCAATCCCAGAGCCACTATGGCACATGGTGACTCAAGCCCGAC
ATCTCGGCTCTCAGGAGATGGAGGCAAGGAGATGTACAAGTTCAAAGTCA
TCCTTAGCTACGTTGTGAATTTGAGGCTACCCTGGACTACATGAGAGCCT
GTCTCAAATTTGTTTGTTTTGAATGCCCTCACTGCAAGCATCCTGTACAG
TCTGAGCAAAGGCAGCTGGAGGCTGTCTAGTGTATTTCTCGAGCCCGGAG
AGATGCTTCTAATGACCCCGTCTTTGATACGAATTCAGCTGGGAGTTATC
CCATATTTTATTTCCCTTTCTTCTATTTTATTCCTCTCCCTCTCTCTTTT
TTCCCCCCCCCCCTGTTTTATATCCCATTTTTTCTCCCCCTATCTTTTTA
TATCCCCTCTCCCATTTAATTCATCTTTCCTCTATTATTATTTCTTTTTT
TTCTTTTTTTCTCTCCTTTTTCTAATTTATCTCTCTTTACTTTTATACTT
TACCCCCACCTATTACCATATATAATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_g11.b1 MSMg01no404_g11.b1 CHROMAT_FILE:
MSMg01no404_g11.b1 PHD_FILE: MSMg01no404_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:04 2005
         (245 letters)



>mm_chr14_68539732_68540376
          Length = 645

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctcgaactcagtgttggcattttccattcaacacaccatacctgggatacgagggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctcgaactcagtgttggcattttccattcaacacaccatacctgggatacgagggtca 260

                                                                       
Query: 61  catggttcacaggacacagagtaccctgaagataaagctaccacagcgtatttcttgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catggttcacaggacacagagtaccctgaagataaagctaccacagcgtatttcttgata 320

                                                                       
Query: 121 ccttgactgagtccgaaacaatctgatttccagagggaactcatctccactgcaaactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgactgagtccgaaacaatctgatttccagagggaactcatctccactgcaaactcc 380

                                                                       
Query: 181 ttccctcacactgcctgccaggacagagagcctaagatctttagaggaggtgaccagggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccctcacactgcctgccaggacagagagcctaagatctttagaggaggtgaccagggg 440

              
Query: 241 tcc 243
           |||
Sbjct: 441 tcc 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no404_g11.g1 MSMg01no404_g11.g1 CHROMAT_FILE:
MSMg01no404_g11.g1 PHD_FILE: MSMg01no404_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:04 2005
         (362 letters)



>mm_chr14_68676499_68677260
          Length = 762

 Score =  648 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattagttaagatggtaacaaaaagagcagagcatctttacccctggaggccagagctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cattagttaagatggtaacaaaaagagcagagcatctttacccctggaggccagagctat 276

                                                                       
Query: 61  actccagacaccgtggccaggtctgacagccttgagtctgtttctggagctactgactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 actccagacaccgtggccaggtctgacagccttgagtctgtttctggagctactgactga 216

                                                                       
Query: 121 taaatggtttacatgggagctggagatgttcggtcagtagaggccttgggtagtttgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 taaatggtttacatgggagctggagatgttcggtcagtagaggccttgggtagtttgtat 156

                                                                       
Query: 181 gaagccctgagttcaatcccagagccactatggcacatggtgactcaagcccgacatctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gaagccctgagttcaatcccagagccactatggcacatggtgactcaagcccgacatctc 96

                                                                       
Query: 241 ggctctcaggagatggaggcaaggagatgtacaagttcaaagtcatccttagctacgttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ggctctcaggagatggaggcaaggagatgtacaagttcaaagtcatccttagctacgttg 36

                                              
Query: 301 tgaatttgaggctaccctggactacatgagagcct 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  tgaatttgaggctaccctggactacatgagagcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)