Query= MSMg01no404_l19.b1 MSMg01no404_l19.b1 CHROMAT_FILE:
MSMg01no404_l19.b1 PHD_FILE: MSMg01no404_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:30 2005
(506 letters)
>mm_chr14_23077338_23078243
Length = 906
Score = 934 bits (483), Expect = 0.0
Identities = 498/503 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaaagttcctccaatttcagagaaataaagcaaatattatcatgagccataatc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggaattcaaagttcctcaaatttcagagaaataaagcaaatattatcatgagccataatc 647
Query: 64 aggatggcaaaacttgtcaatgtctcacttttggagtggagaaaattttttttactctaa 123
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 646 aggatggcaaaacttgtcaatgtctcacttttggagtggagaaaaaattttttactctaa 587
Query: 124 atatgagcaacaaaatttgttagtaaaactactcattacactatggccaaaaatgacttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atatgagcaacaaaatttgttagtaaaactactcattacactatggccaaaaatgacttt 527
Query: 184 tcaaagtctgaagaagtagggttttccatacaatggacaaagcaacaaacccgtacttgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tcaaagtctgaagaagtagggttttccatacaatggacaaagcaacaaacccgtacttgt 467
Query: 244 tgactcctggggtgacagtcccaacaaacaactgggaggcacctgcagggggctttcagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgactcctggggtgacagtcccaacaaacaactgggaggcacctgcagggggctttcagg 407
Query: 304 tgtgtgatttgttctaaccacccactaagaaatggtacctgcttgtctggggaatgagaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tgtgtgatttgttctaaccacccactaagaaatggtacctgcttgtctggggaatgagaa 347
Query: 364 agctggaacctgccccaagtcacaacactggtatggaaaggagcaaggatttcagagtaa 423
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 346 agctggaacctgccccaagtcacaacactggtatggaaaggagcaagaatttcagagtaa 287
Query: 424 ctgttggaatcccaagtcctcacccaacagatggccatatcccatcatggcacccaaatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 286 ctgttggaatcccaagtcctcacccaacagatggccatatcccatcatggcactcaaatg 227
Query: 484 attctctcgtataacccactgag 506
|||||||||||||||||||||||
Sbjct: 226 attctctcgtataacccactgag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_l19.g1 MSMg01no404_l19.g1 CHROMAT_FILE:
MSMg01no404_l19.g1 PHD_FILE: MSMg01no404_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:31 2005
(517 letters)
>mm_chr14_22947931_22948846
Length = 916
Score = 928 bits (480), Expect = 0.0
Identities = 505/514 (98%), Gaps = 3/514 (0%)
Strand = Plus / Plus
Query: 1 tctagctcataactcttaagttcctctgtctgcttgctgcacatcagttcctgaggccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagctcataactcttaagttcctctgtctgcttgctgcacatcagttcctgaggccta 260
Query: 61 cagacaacatggtctatattttggtagaccaggaagtggagaactggctggaaatgaatc 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagacaacatggtctacattttggtagaccaggaagtggagaactggctggaaatgaatc 320
Query: 121 aagaccataagcctcggggtacactcttaaacggcctgtgtcagctagctagcctttgtg 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 aagaccataagcctcgaggtacactcttaaacggcctgtgtcagctagctagcctctgtg 380
Query: 181 tcttcaaggtttcacagattcccaagctagtatgactaagtcttcaaaccctgagcccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttcaaggtttcacagattcccaagctagtatgactaagtcttcaaaccctgagcccat 440
Query: 241 aggggaccttccatattcaaaccatgacaatagggaaataactctgttaagc-aaaaaat 299
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 aggggacattccatattcaaaccatgacaatagggaaataactctgttaagccaaaaaat 500
Query: 300 catttaaagtccaaaaaaagcactcagtctgatttgtgccaaacaacatagcatttgaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catttaaagtccaaaaaaagcactcagtctgatttgtgccaaacaacatagcatttgaca 560
Query: 360 gtacccacttggaactagtaatcttcttgtggttgcccgtagaccatggtttagtacctg 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 gtacccacttggaactagtaatcttcttgtggttgcccatagaccatggtttagtacctg 620
Query: 420 attcttggcaaaatttcctcactactgacttatgtgaagaccaataaggtatgtgttggc 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcttggcaaactttcctcactactgacttatgtgaagaccaataaggtatgtgttggc 680
Query: 480 ttcagctgtcaacctgacacagatctagagtcaa 513
||||||||||||||||||| |||||||||||||
Sbjct: 681 ttcagctgtcaacctgaca--gatctagagtcaa 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 916
Length adjustment: 10
Effective length of query: 507
Effective length of database: 906
Effective search space: 459342
Effective search space used: 459342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
